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Taxonomy browser (Mus musculus)

Mus musculus

Taxonomy ID: 10090 (for references in articles please use NCBI:txid10090)
Scientific name: Mus musculus Linnaeus, 1758
Genbank common name: house mouse
Inherited blast name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name: mouse
includes: LK3 transgenic mice
includes: Mus sp. 129SV
includes: nude mice
includes: transgenic mice
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,863,788 1,846,515
Nucleotide EST 4,871,060 4,870,988
Nucleotide GSS 4,172,452 3,581,146
Protein 321,042 313,818
Structure 5,879 5,879
Genome 1 1
Popset 8,548 8,316
Conserved Domains 17 17
GEO Datasets 644,526 643,981
UniGene 80,236 80,236
PubMed Central 21,324 21,001
Gene 205,782 205,687
HomoloGene 19,032 19,032
SRA Experiments 474,830 468,264
GEO Profiles 50,177,624 50,177,624
Protein Clusters 13 13
Bio Project 29,283 29,143
Bio Sample 512,043 505,612
Bio Systems 2,369 2,369
Assembly 36 33
Clone DB 3,138,278 3,138,278
Probe 865,888 865,878
PubChem BioAssay 138,000 137,992
Taxonomy 17 1

Comments and References:

Note: Some journals identify organisms only with vernacular names like "mouse" or "rats". Currently, an organism idenitified as "mouse" will be found under the name "Mus sp." although we are aware that most of the corresponding sequence records are likely to be from "Mus musculus". If it is important to see all records for "Mus musculus", you should therefore consider retrieving the records for "Mus sp." as well.


Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Mus musculus
See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CHIP CLONEEND EST FINISHING OTHER PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
ABC - Agencourt Bioscience Corporation
- - 223,733 - - - - - - - - 223,733
AGRF - Australian Genome Research Facility Ltd
- - - - - 64 - - - - - 64
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
- - - - - - - 83,712 - - - 83,712
BCM - Baylor College of Medicine
- - - - - - - - 1,535,028 - 30,911 1,565,939
BI - Broad Insititute
- 2,062,578 - - 74,133 80,280 504,473 - 26,538,178 2,790,990 20,454,062 52,504,694
CODON - Codon Devices
- - - - - - 4,510 - - - - 4,510
CRA - Celera Genomics
- - - - - - - - - - 27,161,241 27,161,241
HPGC - Albert Einstein College of Medicine
- - - 19,363 - - - - 1,018,999 - - 1,038,362
IMBGA - Institute of Molecular Biotechnology Genome Analysis
- 176 - - - - - - 1,888 - - 2,064
INCYTE - Incyte Genomics
- - 306,248 - - - - - - - - 306,248
INDIVIDUAL - Direct submission from individual investigator
- - - - - 1,925 - - - - - 1,925
NIA - National Institute on Aging
- - 212,039 - - - - - - - - 212,039
NISC - NIH Intramural Sequencing Center
- - - - - - - - 605,010 - - 605,010
PERLEGEN - Perlegen Sciences
59,749,056 - - - - - - - - - - 59,749,056
PSU - Penn State College of Medicine
- - - - - 74 - - - - - 74
SC - The Sanger Center
- 930,530 - - - 7,552 453,313 - 20,705,317 8,642 7,033,731 29,139,085
SYSU - Sun Yat-sen University
- - - - - 76 - - - - - 76
TIGR - The Institute for Genome Research
- 392,773 - - - - - - - - - 392,773
UCSF - University of California, San Francisco
- - - - - - - 13,418 - - - 13,418
UIACBCB - University of Iowa Center for Bioinformatics and Computation Biology (UIACBCB)
- - 370,823 - - - - - - - - 370,823
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - - 20,073 - - - - 933,280 - - 953,353
UUGC - University of Utah Genome Center
- - - - - - - - - - 591,606 591,606
WUGSC - Washington University, Genome Sequencing Center
- 11,469 580,341 60,489 8 47,409 85,150 - 20,477,084 - 11,342,839 32,604,789
Totals per type
59,749,056 3,397,526 1,693,184 99,925 74,141 137,380 1,047,446 97,130 71,814,784 2,799,632 66,614,390 207,524,594

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mus musculus taxonomy/phylogenetic Animal Diversity Web
2 records from this provider taxonomy/phylogenetic AnimalBase
Mus musculus taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Mus musculus taxonomy/phylogenetic Barcodes of Life
Mus musculus organism-specific BioCyc
DigiMorph images Digital Morphology
36 records from this provider supplemental materials Dryad Digital Repository
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Encyclopedia of life
22 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Integrated Taxonomic Information System
Mus musculus taxonomy/phylogenetic Lifemap
Mus musculus Linnaeus 1758 taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
2 records from this provider taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Sanger companies/research institutes The Sanger Centre
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
17 records from provider organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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