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Taxonomy browser (Flavobacterium columnare)

Flavobacterium columnare

Taxonomy ID: 996 (for references in articles please use NCBI:txid996)
current name
Flavobacterium columnare (Bernardet and Grimont 1989) Bernardet et al. 1996
type strain of Flavobacterium columnare: ATCC:23463, CIP:103531, JCM:21141, BCCM/LMG:10406, BCCM/LMG:13035, NBRC:100251, NCIMB:2248, personal::1-S-2cl, IFO:15943
homotypic synonym:
"Bacillus columnaris" Davis 1922, effective name 1)
"Chondrococcus columnaris" (Davis 1922) Ordal and Rucker 1944, effective name 1)
"Cytophaga columnaris" (Davis 1922) Garnjobst 1945, effective name 1)
"Flexibacter columnaris" (Davis 1922) Leadbetter 1974, effective name 1)
Flavibacterium columnare
Flexibacter columnaris (ex Davis 1922) Bernardet and Grimont 1989
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 7,130 6,098 1,023
Protein 165,189 154,547 -
Genome 1 1 -
Popset 38 37 -
GEO Datasets 14 14 -
PubMed Central 351 351 -
Gene 10,915 5,518 -
SRA Experiments 47 47 -
Protein Clusters 1,851 1,851 -
Identical Protein Groups 34,137 32,748 -
Bio Project 26 24 -
Bio Sample 94 90 3
Bio Systems 142 - -
Assembly 60 55 2
Probe 8 8 -
PubChem BioAssay 6 6 -
Taxonomy 3 1 -


Comments and References:

Bernardet JF & Grimont PAD (1989)
Bernardet, J.F., and Grimont, P.A.D. "Deoxyribonucleic acid relatedness and phenotypic characterization of Flexibacter columnaris sp. nov., nom. rev., Flexibacter psychrophilus sp. nov., nom. rev., and Flexibacter maritimus Wakabayashi, Hikida, and Masumura 1986." Int. J. Syst. Bacteriol. (1989) 39:346-354. [No PubMed record available.]
Bernardet JF et al. (1996)
Bernardet, J.F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K., and Vandamme, P. "Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)." Int. J. Syst. Bacteriol. (1996) 46:128-148. [No PubMed record available.]
Davis HS (1922)
Davis, H.S. "A new bacterial disease of fresh-water fishes." Bull. U.S. Bur. Fish. (1922) 38:261-280. [No PubMed record available.]
Euzeby JP & Kudo T (2001)
Euzeby, J.P., and Kudo, T. "Corrigenda to the Validation Lists." Int. J. Syst. Evol. Microbiol. (2001) 51:1933-1938.
Garnjobst L (1945)
Garnjobst, L. "Cytophaga columnaris (Davis) in pure culture: a myxobacterium pathogenic to fish." J. Bacteriol. (1945) 49:112-128. [No abstract available.]
LaFrentz BR et al. (2018)
LaFrentz, B.R., Garcia, J.C., Waldbieser, G.C., Evenhuis, J.P., Loch, T.P., Liles, M.R., Wong, F.S., and Chang, S.F. "Identification of four distinct phylogenetic groups in Flavobacterium columnare with fish host associations." Front. Microbiol. (2018) 9:452.
Leadbetter ER (1974)
Leadbetter, E.R. "Order II. Cytophagales Nomen novum." In: Bergey's Manual of Determinative Bacteriology, 8th ed. (1974) The Williams and Wilkins Co., Baltimore, p. 99. [No PubMed record available.]
Ordal EJ & Rucker RR (1944)
Ordal, E.J., and Rucker, R.R. "Pathogenic myxobacteria." Proc. Soc. Exp. Biol. Med. (1944) 56:15-18. [No PubMed record available.]
Reichenbach H (1989b)
Reichenbach, H. "Genus I. Cytophaga Winogradsky 1929, 577AL emend." In: J.T. Staley, M.P. Bryant, N. Pfennig and J.G. Holt (ed.), Bergey's Manual of Systematic Bacteriology, 1989, vol. 3. The Williams & Wilkins Co., Baltimore, pp. 2015-2050. [No PubMed record available.]
VALIDATION LIST No. 31 (1989) (Cytophaga columnare)
VALIDATION LIST No. 31. Int. J. Syst. Bacteriol. (1989) 39:495-497.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Flavobacterium columnare meta-databases BacDive
13 records from this provider organism-specific BioCyc
Cytophaga columnaris (ex Davis 1922) Reichenbach, 1989 taxonomy/phylogenetic Encyclopedia of life
4 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Flavobacterium columnare culture/stock collections Global Catalogue of Microorganisms
6 records from this provider organism-specific Integrated Microbial Genomes
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]

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