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Taxonomy browser (Flavobacterium johnsoniae)

Flavobacterium johnsoniae

Taxonomy ID: 986 (for references in articles please use NCBI:txid986)
current name
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Chen et al. 2013
type strain of Flavobacterium johnsoniae: ATCC:17061, CCUG:35202, CFBP:3036, CIP:100931, DSM:2064, IFO:14942, JCM:8514, BCCM/LMG:1341, NBRC:14942, personal::UW101
homotypic synonym:
Vegetative myxobacteria Johnson 1932
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Kim et al. 2012
includes:
Flavobacterium sp. GSE09
Flavobacterium sp. LB-D
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Cytophaga johnsonii" (sic) Stanier 1957, effective name 1)
heterotypic synonym
Cytophaga johnsonae Stanier 1947 (Approved Lists 1980), nom. approb. 2)
heterotypic synonym
Flexibacter aurantiacus Lewin 1969 (Approved Lists 1980), nom. approb. 2)
type strain of Flexibacter aurantiacus: ATCC:23107, DSM:6792, BCCM/LMG:3987, NCIMB:1382, VKM:B-1426, NBRC:15970
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,459 1,240 183
Protein 48,812 38,348 -
Structure 20 6 -
Genome 1 1 -
Popset 35 34 -
PubMed Central 601 601 -
Gene 14,793 4,324 -
SRA Experiments 33 9 -
Protein Clusters 3,672 3,672 -
Identical Protein Groups 24,898 24,430 -
Bio Project 16 12 -
Bio Sample 25 14 12
Bio Systems 358 176 -
Assembly 8 6 3
Probe 3 3 -
PubChem BioAssay 1 1 -
Taxonomy 4 1 -

Notes:

Comments and References:

Bernardet JF et al. (1996)
Bernardet, J.F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K., and Vandamme, P. "Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)." Int. J. Syst. Bacteriol. (1996) 46:128-148. [No PubMed record available.]
Chen WM et al. (2013d)
Chen, W.-M., Huang, W.-C., Young, C.-C., and Sheu, S.-Y. "Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2013) 63:827-834.
Kim JJ et al. (2012)
Kim, J.-J., Kanaya, E., Weon, H.-Y., Koga, Y., Takano, K., Dunfield, P.F., Kwon, S.-W., and Kanaya, S. "Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2012) 62:2018-2024.
Lewin RA (1969), other link:http://mic.sgmjournals.org/cgi/content/abstract/58/2/189
Lewin, R.A. "A classification of flexibacteria." (1969) J. Gen. Microbiol. 58:189-206. [No PubMed abstract available.]
Skerman VBD et al. (1980) (Cytophaga johnsonae)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Flexibacter aurantiacus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Stanier RY (1947)
Stanier, R.Y. "Studies on nonfruiting myxobacteria. I. Cytophaga johnsonae, n. sp., a chitin-decomposing myxobacterium." J. Bacteriol. (1947) 53:297-315. [No abstract available.]
Stine CB et al. (2017)
Stine, C.B., Li, C., Crosby, T.C., Hasbrouck, N.R., Lam, C., and Tadesse, D.A. "Draft whole-genome sequences of 18 Flavobacterium spp." Genome Announc. (2017) 5:e00865-17.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Flavobacterium johnsoniae meta-databases BacDive
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al., 1996 taxonomy/phylogenetic Encyclopedia of life
5 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Flavobacterium johnsoniae culture/stock collections Global Catalogue of Microorganisms
6 records from this provider organism-specific Integrated Microbial Genomes
Cytophaga johnsonae taxonomy/phylogenetic Integrated Taxonomic Information System
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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