Taxonomy browser (Flavobacterium johnsoniae)

type strain of Cytophaga johnsonae: ATCC :17061, CCUG :35202, CFBP:3036, CIP:100931, DSM :2064, IFO :14942, JCM :8514, BCCM/LMG :1341, NBRC :14942, personal::UW101

homotypic synonym:

"Cytophaga johnsonii" (sic) Stanier 1957, effective name, orth. var.^2),3)

Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Kim et al. 2012, emended name⁴⁾

Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Chen et al. 2013, emended name⁴⁾

Flavobacterium johnsonae (sic) (Stanier 1947) Bernardet et al. 1996, orth. var.³⁾

Vegetative myxobacteria Johnson 1932

includes:

Flavobacterium sp. GSE09

Flavobacterium sp. LB-D

NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	1,474	1,247	186
Protein	49,027	38,554	-
Structure	23	7	-
Genome	1	1	-
Popset	35	34	-
PubMed Central	723	723	-
Gene	14,793	4,324	-
SRA Experiments	38	12	-
Protein Clusters	3,672	3,672	-
Identical Protein Groups	25,071	24,592	-
BioProject	22	18	-
BioSample	40	27	13
Assembly	10	8	3
PubChem BioAssay	1	1	-
Taxonomy	5	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).
3) 'Orth. var.' (= orthographic variant) refers to a name not following standard rules of orthography, such as gender disagreement between genus and species, either when originally published or mistakenly corrected in later publications; includes names which are "incorrect original spellings" and "incorrect subsequent spellings" in zoological parlance.
4) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Bernardet JF et al. (1996)

Bernardet, J.F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K., and Vandamme, P. "Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)." Int. J. Syst. Bacteriol. (1996) 46(1):128-148. [No PubMed record available.]

Chen WM et al. (2013d)

Chen, W.-M., Huang, W.-C., Young, C.-C., and Sheu, S.-Y. "Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2013) 63(3):827-834.

Kim JJ et al. (2012)

Kim, J.-J., Kanaya, E., Weon, H.-Y., Koga, Y., Takano, K., Dunfield, P.F., Kwon, S.-W., and Kanaya, S. "Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2012) 62(8):2018-2024.

Lewin RA (1969), other link:http://mic.sgmjournals.org/cgi/content/abstract/58/2/189

Lewin, R.A. "A classification of flexibacteria." J. Gen. Microbiol. (1969) 58(2):189-206. [No PubMed abstract available.]

Stanier RY (1957)

Stanier, R.Y. "Order VIII. Myxobacterales Jahn 1915." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (ed.), Bergey's Manual of Determinative Bacteriology, 7th ed. The Williams and Wilkins Co., Baltimore, 1957. pp. 854-891.

Stanier RY (1947)

Stanier, R.Y. "Studies on nonfruiting myxobacteria. I. Cytophaga johnsonae, n. sp., a chitin-decomposing myxobacterium." J. Bacteriol. (1947) 53(3):297-315. [No abstract available.]

Stine CB et al. (2017)

Stine, C.B., Li, C., Crosby, T.C., Hasbrouck, N.R., Lam, C., and Tadesse, D.A. "Draft whole-genome sequences of 18 Flavobacterium spp." Genome Announc. (2017) 5(46):e00865-17.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Flavobacterium johnsoniae	meta-databases	BacDive
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al., 1996	taxonomy/phylogenetic	Encyclopedia of life
5 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Flavobacterium johnsoniae	culture/stock collections	Global Catalogue of Microorganisms
7 records from this provider	organism-specific	Integrated Microbial Genomes
Cytophaga johnsonae	taxonomy/phylogenetic	Integrated Taxonomic Information System

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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