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Taxonomy browser (Flavobacterium johnsoniae)

Flavobacterium johnsoniae

Taxonomy ID: 986 (for references in articles please use NCBI:txid986)
current name
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996
not verified as type of Flavobacterium johnsoniae: IFO:15970
basionym:
Cytophaga johnsonae Stanier 1947 (Approved Lists 1980), nom. approb. 1) in [Skerman VBD et al. (1980)]
type strain of Cytophaga johnsonae: ATCC:17061, CCUG:35202, CFBP:3036, CIP:100931, DSM:2064, IFO:14942, JCM:8514, BCCM/LMG:1341, NBRC:14942, personal::UW101
homotypic synonym:
"Cytophaga johnsonii" (sic) Stanier 1957, effective name, orth. var. 2),3)
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Kim et al. 2012, emended name 4)
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Chen et al. 2013, emended name 5)
Flavobacterium johnsonae (sic) (Stanier 1947) Bernardet et al. 1996, orth. var. 6)
Vegetative myxobacteria Johnson 1932
includes:
Flavobacterium sp. GSE09
Flavobacterium sp. LB-D
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,488 1,258 188
Protein 61,248 45,611 -
Structure 45 16 -
Genome 1 1 -
Popset 36 35 -
PubMed Central 775 767 -
Gene 14,793 4,324 -
SRA Experiments 42 16 -
Protein Clusters 3,672 3,672 -
Identical Protein Groups 29,404 28,922 -
BioProject 24 19 -
BioSample 40 28 15
Assembly 12 9 -
PubChem BioAssay 1 1 -
Taxonomy 3 1 -

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Bernardet JF et al. (1996)
Bernardet, J.F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K., and Vandamme, P. "Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)." Int. J. Syst. Bacteriol. (1996) 46(1):128-148. [No PubMed record available.]
Chen WM et al. (2013d)
Chen, W.-M., Huang, W.-C., Young, C.-C., and Sheu, S.-Y. "Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2013) 63(3):827-834.
Kim JJ et al. (2012)
Kim, J.-J., Kanaya, E., Weon, H.-Y., Koga, Y., Takano, K., Dunfield, P.F., Kwon, S.-W., and Kanaya, S. "Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2012) 62(8):2018-2024.
Lewin RA (1969), other link:http://mic.sgmjournals.org/cgi/content/abstract/58/2/189
Lewin, R.A. "A classification of flexibacteria." J. Gen. Microbiol. (1969) 58(2):189-206. [No PubMed abstract available.]
Stanier RY (1957)
Stanier, R.Y. "Order VIII. Myxobacterales Jahn 1915." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (ed.), Bergey's Manual of Determinative Bacteriology, 7th ed. The Williams and Wilkins Co., Baltimore, 1957. pp. 854-891.
Stanier RY (1947)
Stanier, R.Y. "Studies on nonfruiting myxobacteria. I. Cytophaga johnsonae, n. sp., a chitin-decomposing myxobacterium." J. Bacteriol. (1947) 53(3):297-315. [No abstract available.]
Stine CB et al. (2017)
Stine, C.B., Li, C., Crosby, T.C., Hasbrouck, N.R., Lam, C., and Tadesse, D.A. "Draft whole-genome sequences of 18 Flavobacterium spp." Genome Announc. (2017) 5(46):e00865-17.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Flavobacterium johnsoniae meta-databases BacDive
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al., 1996 taxonomy/phylogenetic Encyclopedia of life
5 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Flavobacterium johnsoniae culture/stock collections Global Catalogue of Microorganisms
7 records from this provider organism-specific Integrated Microbial Genomes
Cytophaga johnsonae taxonomy/phylogenetic Integrated Taxonomic Information System
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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