Taxonomy browser (Phocaeicola vulgatus)

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Taxonomy browser (Phocaeicola vulgatus)

Phocaeicola vulgatus

Taxonomy ID: 821 (for references in articles please use NCBI:txid821)

current name

Phocaeicola vulgatus (Eggerth and Gagnon 1933) García-López et al. 2020 in [VALIDATION LIST No. 193 (2020), García-López M et al. (2019)]

basionym:

Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb.¹⁾

type strain of Bacteroides vulgatus: ATCC :8482, BCRC :12903, CCUG :4940, CIP:103714, DSM :1447, IFO :14291, JCM :5826, BCCM/LMG :17767, BCCM/LMG :7956, NBRC :14291, NCTC :11154

includes:

bacterium NLAE-zl-G202

NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	93,629	91,987	165
Protein	1,143,896	1,112,027	-
Structure	66	4	-
Genome	1	1	-
Popset	14	14	-
GEO Datasets	81	63	-
PubMed Central	2,675	2,675	-
Gene	13,455	8,661	-
SRA Experiments	660	593	-
Protein Clusters	3,293	3,293	-
Identical Protein Groups	198,743	194,629	-
BioProject	122	103	-
BioSample	4,168	4,112	12
Assembly	776	767	3
PubChem BioAssay	51	51	-
Taxonomy	14	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

VALIDATION LIST No. 193 (2020)

Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.

García-López M et al. (2019), doi: 10.3389/fmicb.2019.02083, PubMed: abstract

García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 type-strain genomes improves taxonomic classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.

Cato EP & Johnson JL (1976)

Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]

Eggerth AH & Gagnon BH (1933), other link:http://jb.asm.org/content/25/4/389.long

Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]

Hahnke RL et al. (2016)

Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.

List of Changes in Taxonomic Opinion No. 26 (2017)

"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Phocaeicola vulgatus	meta-databases	BacDive
Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
36 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Bacteroides vulgatus	culture/stock collections	Global Catalogue of Microorganisms
75 records from provider	organism-specific	Integrated Microbial Genomes

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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