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Taxonomy browser (Bacteroides fragilis)

Bacteroides fragilis

Taxonomy ID: 817 (for references in articles please use NCBI:txid817)
current name
Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb. 1)
type strain of Bacteroides fragilis: ATCC:25285, CCUG:4856, CIP:77.16, DSM:2151, JCM:11019, BCCM/LMG:10263, NCTC:9343
homotypic synonym:
"Fusiformis fragilis" Topley and Wilson 1929, effective name 2)
"Ristella fragilis" Prevot 1938, effective name 2)
"Pseudobacterium fragilis" Krasil'nikov 1949, effective name 2)
Bacillus fragilis Veillon and Zuber 1898
includes:
Bacteroides sp. 2_1_16
Bacteroides sp. 2_1_56FAA
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacteroides inaequalis" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym
"Bacteroides incommunis" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym
"Bacteroides uncatus" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym
"Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym
"Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym
"Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym
"Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym
"Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym
"Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym
"Sphaerophorus intermedius" Bergan and Hovig 1968, effective name 2)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 72,303 37,245 3,722
Protein 1,396,278 986,300 -
Structure 119 22 -
Genome 1 1 -
Popset 39 39 -
Conserved Domains 5 2 -
GEO Datasets 130 52 -
PubMed Central 8,052 8,052 -
Gene 13,725 29 -
SRA Experiments 1,770 1,605 -
Protein Clusters 5,173 5,173 -
Identical Protein Groups 200,449 151,932 -
Bio Project 198 88 -
Bio Sample 2,450 2,331 107
Bio Systems 619 152 -
Assembly 338 240 4
Probe 19 19 -
PubChem BioAssay 246 243 -
Taxonomy 89 1 -

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Cato EP & Johnson JL (1976)
Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]
Eggerth AH & Gagnon BH (1933), other link:http://jb.asm.org/content/25/4/389.long
Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]
Hahnke R et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., GarcIa-Lopez, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Goker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67:2081-2086.
Prevot AR (1938)
Prevot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Topley WWC & Wilson GS (1929)
Topley, W.W.C., and Wilson, G.S. The Principles of Bacteriology and Immunity, 1st ed. (1929) Edward Arnold and Co., London, pp. 1-587. [No PubMed record available.]
Veillon A & Zuber A (1898)
Veillon, A., and Zuber, A. "Recherches sur quelques microbes strictement anaerobies et leur role en pathologie." Archives de Medecine Experimentale et d'Anatomie Pathologique (1898) 10:517-545. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacteroides fragilis meta-databases BacDive
11 records from this provider organism-specific BioCyc
Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
23 records from this provider organism-specific Genomes On Line Database
Bacteroides fragilis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
17 records from this provider organism-specific Integrated Microbial Genomes
Sanger companies/research institutes The Sanger Centre
Notes:
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