Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Bacteroides fragilis)

Bacteroides fragilis

Taxonomy ID: 817 (for references in articles please use NCBI:txid817)
current name
Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb. 1)
type strain of Bacteroides fragilis: ATCC:25285, CCUG:4856, CIP:77.16, DSM:2151, JCM:11019, BCCM/LMG:10263, NCTC:9343
homotypic synonym:
"Fusiformis fragilis" Topley and Wilson 1929, effective name 2)
"Ristella fragilis" Prevot 1938, effective name 2)
"Pseudobacterium fragilis" Krasil'nikov 1949, effective name 2)
Bacillus fragilis Veillon and Zuber 1898
includes:
Bacteroides sp. 2_1_16
Bacteroides sp. 2_1_56FAA
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacteroides inaequalis" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym
"Bacteroides incommunis" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym
"Bacteroides uncatus" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym
"Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym
"Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym
"Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym
"Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym
"Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym
"Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym
"Sphaerophorus intermedius" Bergan and Hovig 1968, effective name 2)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 76,454 44,892 202
Protein 1,481,431 1,063,003 -
Structure 121 24 -
Genome 1 1 -
Popset 41 41 -
Conserved Domains 6 2 -
GEO Datasets 130 52 -
PubMed Central 10,737 10,737 -
Gene 26,927 8,594 -
SRA Experiments 2,195 1,994 -
Protein Clusters 5,173 5,173 -
Identical Protein Groups 293,637 250,057 -
BioProject 234 121 -
BioSample 3,623 3,418 108
Assembly 663 563 5
PubChem BioAssay 262 259 -
Taxonomy 89 1 -

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Cato EP & Johnson JL (1976)
Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]
Eggerth AH & Gagnon BH (1933), other link:http://jb.asm.org/content/25/4/389.long
Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Prevot AR (1938)
Prevot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Topley WWC & Wilson GS (1929)
Topley, W.W.C., and Wilson, G.S. The Principles of Bacteriology and Immunity, 1st ed. (1929) Edward Arnold and Co., London, pp. 1-587. [No PubMed record available.]
Veillon A & Zuber A (1898)
Veillon, A., and Zuber, A. "Recherches sur quelques microbes strictement anaerobies et leur role en pathologie." Archives de Medecine Experimentale et d'Anatomie Pathologique (1898) 10:517-545. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacteroides fragilis meta-databases BacDive
11 records from this provider organism-specific BioCyc
Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
23 records from this provider organism-specific Genomes On Line Database
Bacteroides fragilis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
22 records from this provider organism-specific Integrated Microbial Genomes
Sanger companies/research institutes The Sanger Centre
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]