Taxonomy browser (Chlamydia trachomatis)

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Taxonomy browser (Chlamydia trachomatis)

Chlamydia trachomatis

Taxonomy ID: 813 (for references in articles please use NCBI:txid813)

current name

Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980) emend. Everett et al. 1999, nom. approb.¹⁾

type strain of Chlamydia trachomatis: ATCC :VR-571B, personal::A/Har-13, DSM :19440

homotypic synonym:

"Rickettsia trachomatis" (Busacca 1935) Foley and Parrot 1937, effective name²⁾

"Chlamydozoon trachomatis" (Busacca 1935) Moshkovski 1945, effective name²⁾

NCBI BLAST name: chlamydias
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Rickettsia trachomae" (sic) Busacca 1935, effective name²⁾

Lineage( full ): cellular organisms; Bacteria; PVC group; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	76,817	76,253	11
Protein	201,517	132,151	-
Structure	86	38	-
Genome	1	1	-
Popset	206	206	-
Conserved Domains	11	3	-
GEO Datasets	191	174	-
PubMed Central	13,142	13,142	-
Gene	88,324	17,763	-
SRA Experiments	2,368	1,465	-
GEO Profiles	77,470	31,440	-
Protein Clusters	900	900	-
Identical Protein Groups	40,228	39,282	-
Bio Project	184	64	-
Bio Sample	2,558	1,696	1
Bio Systems	7,105	-	-
Assembly	190	106	1
Probe	36	32	-
PubChem BioAssay	143	141	-
Taxonomy	100	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).

Comments and References:

Bussaca A (1935)

Busacca, A. "Un germe aux caracteres de rickettsies (Rickettsia trachomae) dans les tissus trachomateux." Archives d'Ophthalmologie (1935) 52:567-572. [No PubMed record available.]

Everett KD et al. (1999)

Everett, K.D., Bush, R.M., Andersen, A.A. "Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms." Int. J. Syst. Bacteriol. (1999) 49:415-440.

Fukushi H et al. (1993)

Fukushi, H., and Hirai, K. "Restriction fragment length polymorphisms of rRNA as genetic markers to differentiate Chlamydia spp." Int. J. Syst. Bacteriol. (1993) 43:613-617.

Gaydos CA et al. (1993)

Gaydos, C.A., Palmer, L., Quinn, T.C., Falkow, S., and Eiden, J.J. "Phylogenetic relationship of Chlamydia pneumoniae to Chlamydia psittaci and Chlamydia trachomatis as determined by analysis of 16S ribosomal DNA sequences." Int. J. Syst. Bacteriol. (1993) 43:610-612.

Kalman S et al. (1999)

Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W., and Stephens, R.S. "Comparative genomes of Chlamydia pneumoniae and C. trachomatis." Nature Genet. (1999) 21:385-389.

Rake GW (1957)

Rake, G.W. "Family II. Chlamydiaceae Rake, Fam. Nov." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (eds.), Bergey's Manual of Determinative Bacteriology, seventh edition, The Williams & Wilkins Co, Baltimore (1957). p. 957. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Chlamydia trachomatis	meta-databases	BacDive
10 records from this provider	organism-specific	BioCyc
Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
18 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Chlamydia trachomatis	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
83 records from this provider	organism-specific	Integrated Microbial Genomes
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]

Comments and questions to info@ncbi.nlm.nih.gov

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