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Taxonomy browser (Danio rerio)

Danio rerio

Taxonomy ID: 7955 (for references in articles please use NCBI:txid7955)
Scientific name: Danio rerio (Hamilton, 1822)
homotypic synonym: Brachydanio rerio
homotypic synonym: Cyprinus rerio Hamilton, 1822
Genbank common name: zebrafish
Inherited blast name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
synonym: Brachydanio rerio frankei
synonym: Danio frankei
synonym: Danio rerio frankei
common name: leopard danio
common name: zebra danio
common name: zebra fish
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Otomorpha; Ostariophysi; Otophysi; Cypriniphysae; Cypriniformes; Cyprinoidea; Cyprinidae; Danio
   Entrez records   
Database name Direct links
Nucleotide 224,733
Nucleotide EST 1,488,343
Nucleotide GSS 180,962
Protein 88,178
Structure 337
Genome 1
Popset 120
Conserved Domains 3
GEO Datasets 19,420
UniGene 53,558
PubMed Central 14,153
Gene 100,214
HomoloGene 14,559
SRA Experiments 53,098
GEO Profiles 328,737
Protein Clusters 1
Identical Protein Groups 60,618
Bio Project 1,276
Bio Sample 45,418
Bio Systems 1,797
Assembly 9
Clone DB 924,637
Probe 80,687
PubChem BioAssay 654
Taxonomy 1

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Danio rerio
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND EST FINISHING PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
ABC - Agencourt Bioscience Corporation
- 375,745 - - - - - - - 375,745
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
- - - - - 25,412 - - - 25,412
GIS - Genome Institute of Singapore
- 22,084 - - - - - - - 22,084
MPGEB - Max-Planck Institute for Developmental Biology
281,594 - - - - - - - - 281,594
NISC - NIH Intramural Sequencing Center
- - - - - - 188,828 - - 188,828
SC - The Sanger Center
1,619,688 - - 27,813 548,419 - 18,562,176 28,077 25,519,092 46,305,265
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 228 - - - 11,839 - - 12,067
WUGSC - Washington University, Genome Sequencing Center
- 64,518 - - - - - - - 64,518
Totals per type
1,901,282 462,347 228 27,813 548,419 25,412 18,762,843 28,077 25,519,092 47,275,513

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Danio rerio taxonomy/phylogenetic Barcodes of Life
13 records from this provider supplemental materials Dryad Digital Repository
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Encyclopedia of life
4 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639469800: Danio rerio Tuebingen organism-specific Integrated Microbial Genomes
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Integrated Taxonomic Information System
Danio rerio taxonomy/phylogenetic Lifemap
Zebrafish Model Organism Database taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Plazi
Brachydanio rerio taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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