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Taxonomy browser (Vibrio cholerae)

Vibrio cholerae

Taxonomy ID: 666 (for references in articles please use NCBI:txid666)
current name
Vibrio cholerae Pacini 1854
type strain of Vibrio cholerae: ATCC:14035, CCUG:9118 A, CECT:514, CIP:62.13, NCTC:8021
homotypic synonym:
"Vibrio cholera" (sic) Pacini 1854, effective name 1)
"Bacillus cholerae" (Pacini 1854) Trevisan 1884, effective name 1)
"Spirillum cholerae" (Pacini 1854) Mac1889, effective name 1)
"Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909, effective name 1)
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillo virgola del Koch" Trevisan 1884, effective name 1)
heterotypic synonym
"Bacillus cholerae-asiaticae" Trevisan 1884, effective name 1)
heterotypic synonym
"Kommabacillus" Koch 1884, effective name 1)
heterotypic synonym
"Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885, effective name 1)
heterotypic synonym
"Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885, effective name 1)
heterotypic synonym
"Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896, effective name 1)
heterotypic synonym
"Vibrio comma" (Schroeter 1886) Blanchard 1906, effective name 1)
homotypic synonym:
"Microspira comma" Schroeter 1886, effective name 1)
heterotypic synonym
Vibrio cholerae biovar albensis
heterotypic synonym
Vibrio cholerae bv. albensis
heterotypic synonym
Vibrio albensis Lehmann and Neumann 1896
type strain of Vibrio albensis: ATCC:14547, CCUG:48664, BCCM/LMG:4406, NCIMB:41
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
   Entrez records   
Database name Subtree links Direct links
Nucleotide 272,366 186,371
Protein 2,856,403 2,145,208
Structure 546 255
Genome 1 1
Popset 311 298
Conserved Domains 8 7
GEO Datasets 999 895
PubMed Central 16,925 16,925
Gene 43,383 404
SRA Experiments 8,039 6,496
Protein Clusters 5,560 5,560
Identical Protein Groups 340,913 314,218
Bio Project 670 395
Bio Sample 8,324 6,934
Bio Systems 3,557 1,086
Assembly 1,113 728
Probe 251 229
PubChem BioAssay 275 253
Taxonomy 286 1

Notes:

Comments and References:

Hendrie MS et al. (1970)
Hendrie, M.S., Hodgkiss, W., and Shewan, J.M. "The identification, taxonomy and classification of luminous bacteria." J. Gen. Microbiol. (1970) 64:151-169. [No PubMed record available.]
Nandi S et al. (1997)
Nandi, S., Khetawat, G., Sengupta, S., Majumder, R., Kar, S., Bhadra, R.K., Roychoudhury, S., and Das, J. "Rearrangements in the genomes of Vibrio cholerae strains belonging to different serovars and biovars." Int. J. Syst. Bacteriol. (1997) 47:858-862.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Reichelt JL et al. (1976)
Reichelt, J.L., Baumann, P., and Baumann, L. "Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization." Arch. Microbiol. (1976) 110:101-120.
Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Vibrio cholerae meta-databases BacDive
11 records from this provider organism-specific BioCyc
dryaddb supplemental materials Dryad Digital Repository
Vibrio cholerae Pacini 1854 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
41 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio cholerae culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
237 records from this provider organism-specific Integrated Microbial Genomes
Vibrio cholerae taxonomy/phylogenetic Lifemap
4 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Vibrio cholerae taxonomy/phylogenetic TreeBase
Vibrio cholerae Pacini, 1854 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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