Taxonomy browser (Citrobacter freundii)

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Taxonomy browser (Citrobacter freundii)

Citrobacter freundii

Taxonomy ID: 546 (for references in articles please use NCBI:txid546)

current name

Citrobacter freundii (Braak 1928) Werkman and Gillen 1932

type strain of Citrobacter freundii: ATCC :8090, CCUG :418, CIP:57.32, DSM :30039, HAMBI:1695, IFO :12681, JCM :1657, BCCM/LMG :3246, NBRC :12681, NCAIM B.01468, NCTC :9750, NRRL :B-2643, MTCC:1658

homotypic synonym:

"Bacterium freundii" Braak 1928, effective name¹⁾

"Escherichia freundii" (Braak 1928) Yale 1939, effective name²⁾

includes:

Citrobacter sp. HPC1276

Citrobacter sp. KDS 3

NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Citrobacter ballerupensis

heterotypic synonym

the Ballerup group of bacteria

heterotypic synonym

the Bethesda group of bacteria

heterotypic synonym

"Salmonella ballerup" Kauffmann and Mller 1940, effective name³⁾

heterotypic synonym

"Salmonella hormaechei" Monteverde 1944, effective name⁴⁾

Lineage( full ): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	186,263	184,702	763
Protein	2,049,276	2,001,345	-
Structure	64	62	-
GEO Datasets	20	20	-
PubMed Central	7,739	7,739	-
Gene	25,513	19,880	-
SRA Experiments	3,778	3,743	-
Protein Clusters	3,464	3,464	-
Identical Protein Groups	827,621	822,655	-
BioProject	577	556	-
BioSample	5,137	5,106	20
Datasets Genome	3,809	3,796	-
Genetic Testing Registry	3	3	-
PubChem BioAssay	286	286	-
Taxonomy	19	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

image:Citrobacter freundii

Image from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.

Braak HR (1928)

Braak, H.R. "Onderzoekingen over vergisting van Glycerine". Thesis (1928) Meinema W.D. Uitgever-Delft. pp. 1-233. [No PubMed record available.]

Kauffmann F & Moller E (1940)

Kauffmann, F., and Moller, E. "A new type of Salmonella (S. ballerup) with Vi antigen." J. Hyg. (1940) 40:246-251. [No PubMed record available.]

Lapage SP et al. (1992) (reference with type strain information)

Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

Monteverde (1944)

Monteverde, J.J. "A new type of Salmonella genus" Nature (1944) 154:676. [No PubMed record available.]

Sakazaki R (1984)

Sakazaki, R. "Genus IV. Citrobacter Werkman and Gillen 1932, 173AL." In: N.R. Krieg and J.G. Holt (ed.), Bergey's Manual of Systematic Bacteriology, vol. 1, (1984). The Williams & Wilkins Co, Baltimore, pp. 458-461. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Yale MW (1939)

Yale, M.W. "Genus Escherichia Castellani and Chalmers." In: Breed, Murray, and Hitchens (eds.), Bergey's Manual of Determinative Bacteriology, 5th ed. (1939). The Williams and Wilkins Co., Baltimore, pp. 430-436. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Citrobacter freundii	meta-databases	BacDive - Free access to bacterial information database
44 records from this provider	organism-specific	BioCyc
Citrobacter freundii (Braak 1928) Werkman and Gillen 1932 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 335 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Citrobacter freundii	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
112 records from this provider	organism-specific	Integrated Microbial Genomes
Citrobacter freundii (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Escherichia freundii	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases
Citrobacter freundii	taxonomy/phylogenetic	TreeBase

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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