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Taxonomy browser (Bacillus velezensis)

Bacillus velezensis

Taxonomy ID: 492670 (for references in articles please use NCBI:txid492670)
current name
Bacillus velezensis Ruiz-Garcia et al. 2005
type strain of Bacillus velezensis: BCCM/LMG:22478, personal::CR-502, CECT:5686, CCUG:50740, not CECT 5687, KCTC:13012, NRRL:B:41580
includes:
Bacillus sp. 5RB
Bacillus sp. CBMB205
Bacillus sp. JJ-D34
Bacillus sp. KACC 18228
Bacillus sp. NRRL B-41580
Bacillus sp. NRRL B-4257
Bacillus sp. YC7007
Bacillus sp. YC7010
Bacillus sp. YJ11-1-4
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Bacillus amyloliquefaciens subsp. plantarum Borriss et al. 2011
type strain of Bacillus amyloliquefaciens subsp. plantarum: BGSC:10A6, DSM:23117, personal::FZB42
heterotypic synonym
Bacillus methylotrophicus Madhaiyan et al. 2010 emend. Dunlap et al. 2015
type strain of Bacillus methylotrophicus: KACC:13105, NCCB:100236, personal::CBMB205, CMCB:205
heterotypic synonym
"Bacillus oryzicola" Chung et al. 2015, effective name 1)
type strain of "Bacillus oryzicola": personal::YC7010, KACC:18228
heterotypic synonym
Bacillus methylotrophicus subsp. plantarum
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 14,067 13,643
Protein 690,244 642,533
Structure 9 -
Genome 1 1
Popset 308 308
GEO Datasets 14 -
PubMed Central 236 188
Gene 31,787 10
SRA Experiments 59 36
Protein Clusters 1,870 1,870
Identical Protein Groups 132,689 129,207
Bio Project 187 169
Bio Sample 516 213
Bio Systems 2,725 250
Assembly 183 170
Probe 21 -
Taxonomy 16 1

Notes:

Comments and References:

Borriss R et al. (2011)
Borriss, R., Chen, X.-H., Rueckert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., Junge, H., Vater, J., Puhler, A., and Klenk, H.-P. "Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons." Int. J. Syst. Evol. Microbiol. (2011) 61:1786-1801.
Chung EJ et al. (2015b)
Chung, E.J., Hossain, M.T., Khan, A., Kim, K.H., Jeon, C.O., and Chung, Y.R. "Bacillus oryzicola sp. nov., an endophytic bacterium isolated from the roots of rice with antimicrobial, plant growth promoting, and systemic resistance inducing activities in rice." Plant Pathol. J. (2015) 31:152-164.
Dunlap CA et al. (2015)
Dunlap, C.A., Kim, S.J., Kwon, S.W., and Rooney, A.P. "Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus." Int. J. Syst. Evol. Microbiol. (2015) 65:2104-2109.
Dunlap CA et al. (2016)
Dunlap, C.A., Kim, S.-J., Kwon, S.-W., and Rooney, A.P. "Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics." Int. J. Syst. Evol. Microbiol. (2016) 66:1212-1217.
Fan B et al. (2017)
Fan, B., Blom, J., Klenk, H.-P., and Borriss, R. "Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis form an 'Operational Group B. amyloliquefaciens' within the B. subtilis species complex." Front. Microbiol. (2017) 8:22.
Madhaiyan M et al. (2010f)
Madhaiyan, M., Poonguzhali, S., Kwon, S.-W., and Sa, T.-M. "Bacillus methylotrophicus sp. nov. a methanol-utilizing, plant-growth-promoting bacterium isolated from rice rhizosphere soil." Int. J. Syst. Evol. Microbiol. (2010) 60:2490-2495.
Ruiz-Garcia C et al. (2005)
Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., Llamas, I,. and Quesada, E. "Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain." Int. J. Syst. Evol. Microbiol. (2005) 55:191-195. Published online 30 July 2004. doi:10.1099/ijs.0.63310-0. [N.B.: the type strain is listed as CECT 5686 in the abstract, but as CECT 5687 in the body of the text. CECT 5686 is apparently correct, according to the annotation at the CECT.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacillus velezensis meta-databases BacDive
9 records from this provider organism-specific BioCyc
64 records from this provider organism-specific Genomes On Line Database
Bacillus methylotrophicus culture/stock collections Global Catalogue of Microorganisms
28 records from this provider organism-specific Integrated Microbial Genomes
Bacillus velezensis taxonomy/phylogenetic Lifemap
Notes:
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Information from sequence entries

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