Taxonomy browser (Nocardia farcinica)

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Taxonomy browser (Nocardia farcinica)

Nocardia farcinica

Taxonomy ID: 37329 (for references in articles please use NCBI:txid37329)

current name

Nocardia farcinica Trevisan 1889

type strain of Nocardia farcinica: ATCC :3318, CCUG :10109, CCUG :27778, CCUG :48656, CIP:104775, DSM :43665, IEGM:621, IFO :15532, JCM :3088, NBRC :15532, NCTC :11134, NRRL :B-2089, DSM :43257, DSM :43578, NCIMB:12058

homotypic synonym:

"Streptothrix farcinica" (Trevisan 1889) Rossi-Doria 1891, effective name¹⁾

"Actinomyces farcinicus" (Trevisan 1889) Gasperini 1892, effective name²⁾

"Bacillus farcinicus" (Trevisan 1889) Gasperini 1892, effective name³⁾

"Oospora farcinica" (Trevisan 1889) Sauvageau and Radais 1892, effective name⁴⁾

"Actinomyces bovis farcinicus" Gasperini 1894, effective name⁵⁾

"Cladothrix farcinica" (Trevisan 1889) Mace 1901, effective name⁶⁾

"Discomyces farcinicus" (Trevisan 1889) Krasil'nikov 1941, effective name⁷⁾

Nocardia farcinica Trevisan 1889 emend. Nouioui et al. 2018, emended name⁸⁾ in [Nouioui I et al. (2018c)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Streptothrix farcini bovis" Kitt 1899, effective name⁹⁾

heterotypic synonym

"Bacterium nocardi" (sic) Migula 1900, effective name¹⁰⁾

heterotypic synonym

"Streptothrix nocardii" (Migula 1900) Foulerton and Jones 1901, effective name¹¹⁾

heterotypic synonym

"Bacillus nocardi" (sic) (Migula 1900) Matzuschita 1902, effective name¹²⁾

Lineage( full ): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Nocardia

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	19,134	18,449	530
Protein	141,598	134,927	-
Structure	16	7	-
PubMed Central	1,031	1,031	-
Gene	24,597	12,419	-
SRA Experiments	137	137	-
Protein Clusters	2,604	2,604	-
Identical Protein Groups	96,422	95,116	-
BioProject	21	19	-
BioSample	224	222	5
Datasets Genome	72	70	-
PubChem BioAssay	15	15	-
Taxonomy	3	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
9) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
10) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
11) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
12) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Gulvik CA et al. (2019)

Gulvik, C.A., Arthur, R.A., Humrighouse, B.W., Batra, D., Rowe, L.A., Lasker, B.A., and McQuiston, J.R. "Complete genome sequence of Nocardia farcinica W6977T obtained by combining Illumina and PacBio reads." Microbiol. Resour. Announc. (2019) 8:e01373-18.

Judicial Commission ICSB (1987)

Judicial Commission of the International Committee on Systematic Bacteriology "Minutes of the Meeting, 5 September 1986, Manchester, United Kingdom." Int. J. Syst. Bacteriol. (1987) 37:85-87. [Note: the request of Tsukamura (1985) is not upheld (Minute 20).] [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Trevisan V (1889)

Trevisan, V. I generie e le specie della Batteriacee. (1889) Zanaboni and Gabuzzi, Milan, pp. 1-35. [No PubMed record available.]

Tsukamura M (1982b)

Tsukamura, M. "Rejection of the name Nocardia farcinica Trevisan 1889 (Approved Lists 1980) request for an opinion." Int. J. Syst. Bacteriol. (1982) 32:235-236. [No PubMed record available.] [N.B.: the request was denied by the Judicial Commission.]

Wayne LG (1984)

Wayne, L.G. "Actions of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinions published in 1982." Int. J. Syst. Bacteriol. (1984) 34:272-273. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Nocardia farcinica	meta-databases	BacDive - Free access to bacterial information database
4 records from this provider	organism-specific	BioCyc
Nocardia farcinica Trevisan 1889 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 4 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Nocardia farcinica	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
Nocardia farcinica Trevis.	taxonomy/phylogenetic	Index Fungorum
3 records from this provider	organism-specific	Integrated Microbial Genomes
Nocardia farcinica \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Nocardia farcinica	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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