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Taxonomy browser (Mycobacteroides abscessus)

Mycobacteroides abscessus

Taxonomy ID: 36809 (for references in articles please use NCBI:txid36809)
current name
Mycobacteroides abscessus (Moore and Frerichs 1953) Gupta et al. 2018
basionym:
Mycobacterium chelonae subsp. abscessus (Moore and Frerichs 1953) Kubica et al 1972 (Approved Lists 1980), nom. approb. 1)
type strain of Mycobacterium chelonae subsp. abscessus: ATCC:19977, CCUG:20993, CIP:104536, DSM:44196, JCM:13569, NCTC:13031, TMC:1543, personal::Hauduroy L948
homotypic synonym:
"Mycobacterium chelonei" (sic) Bergey et al. 1923, effective name 2)
"Mycobacterium abcessus" Moore and Frerichs 1953, effective name 2)
Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992 emend. Leao et al. 2011, emended name 3)
Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992 emend. Tortoli et al. 2016, emended name 3)
Mycobacterium abscessus (Adékambi et al., 2006) Tortoli et al. 2016 emend. Nouioui et al. 2018, emended name 3) in [Nouioui I et al. (2018c)]
Mycobacterium abscessus subsp. bolletii (Adékambi et al., 2006) Leao et al. 2011 emend. Tortoli et al. 2016 emend. Nouioui et al. 2018, emended name 3) in [Nouioui I et al. (2018c)]
Mycobacterium chelonei subsp. abscessus
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae; Mycobacteroides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 205,499 44,698 1,024
Protein 8,263,805 1,882,473 -
Structure 165 88 -
Genome 2 1 -
Popset 177 140 -
Conserved Domains 1 1 -
GEO Datasets 161 129 -
PubMed Central 2,894 2,852 -
Gene 30,452 15,104 -
SRA Experiments 9,102 3,321 -
Protein Clusters 5,800 5,800 -
Identical Protein Groups 504,204 319,463 -
BioProject 208 82 -
BioSample 9,216 3,653 48
Assembly 1,965 435 14
PubChem BioAssay 330 307 -
Taxonomy 88 1 -

Notes:

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Gupta RS et al. (2018)
Gupta, R.S., Lo, B., and Son, J. "Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera." Front. Microbiol. (2018) 9:67. [Corrigendum: Front. Microbiol. (2019) 10:714. (PMID 31024493)]
Hill LR et al. (1984) (reference relating to orthographic revision)
Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34(4):508-511. [No PubMed record available.]
Kusunoki S & Ezaki T (1992)
Kusunoki, S., and Ezaki, T. "Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov." Int. J. Syst. Bacteriol. (1992) 42:240-245.
Leao SC et al. (2009)
Leao, S.C., Tortoli, E., Viana-Niero, C., Ueki, S.Y., Lima, K.V., Lopes, M.L., Yubero, J., Menendez, M.C., and Garcia, M.J. "Characterization of mycobacteria from a major Brazilian outbreak suggests a revision of the taxonomic status of members of the Mycobacterium chelonae-abscessus group." J. Clin. Microbiol. (2009) 47:2691-2698.
Leao SC et al. (2011)
Leao, S.C., Tortoli, E., Euzeby, J.P., and Garcia, M.J. "Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus." Int. J. Syst. Evol. Microbiol. (2011) 61:2311-2313.
Moore M & Frerichs JB (1953)
Moore, M., and Frerichs, J.B. "An unusual acid-fast infection of the knee, with subcutaneous, abscess-like lesions of the gluteal region." J. Invest. Dermatol. (1953) 20:133-169. [No abstract available.]
Skerman VBD et al. (1980) (Mycobacterium chelonei subsp. abscessus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Tortoli E et al. (2016b)
Tortoli, E., Kohl, T.A., Brown-Elliott, B.A., Trovato, A., Leao, S.C., Garcia, M.J., Vasireddy, S., Turenne, C.Y., Griffith, D.E., Philley, J.V., Baldan, R., Campana, S., Cariani, L., Colombo, C., Taccetti, G., Teri, A., Niemann, S., Wallace, R.J. Jr., and Cirillo, D.M. "Emended description of Mycobacterium abscessus, Mycobacterium abscessus subs. abscessus, Mycobacterium abscessus subsp. bolletii and designation of Mycobacterium abscessus subsp. massiliense comb. nov." Int. J. Syst. Evol. Microbiol. (2016) 66:4471-4479.
VALIDATION LIST No. 181 (2018)
Validation List No. 181: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68:1411-1417.
Vuorio R et al. (1999) (reference with type strain information)
Vuorio, R., Andersson, M.A., Rainey, F.A., Kroppenstedt, R.M., Kampfer, P., Busse, H.-J., Viljanen, M., and Salkinoja-Salonen, M. "A new rapidly growing mycobacterial species, Mycobacterium murale sp. nov., isolated from the indoor walls of a children's day care centre." Int. J. Syst. Bacteriol. (1999) 49:25-35.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mycobacterium chelonae subsp. abscessus meta-databases BacDive
8 records from this provider organism-specific BioCyc
Mycobacterium abscessus (Moore and Frerichs 1953) Kusunoki and Ezaki 1992 taxonomy/phylogenetic Encyclopedia of life
15 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Mycobacterium abscessus culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
205 records from this provider organism-specific Integrated Microbial Genomes
Mycobacterium abscessus taxonomy/phylogenetic Lifemap
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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