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Taxonomy browser (Phocaeicola dorei)

Phocaeicola dorei

Taxonomy ID: 357276 (for references in articles please use NCBI:txid357276)
current name
Phocaeicola dorei (Bakir et al. 2006) García-López et al. 2020 in [VALIDATION LIST No. 193 (2020), García-López M et al. (2019)]
basionym:
Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016
type strain of Bacteroides dorei: DSM:17855, JCM:13471, personal::175
includes:
Bacteroides sp. 175T
Bacteroides sp. 219
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 16,801 16,123 216
Protein 346,102 317,163 -
Structure 2 1 -
Genome 1 1 -
Popset 8 8 -
PubMed Central 766 766 -
Gene 8,959 4,598 -
SRA Experiments 293 269 -
Protein Clusters 2,978 2,978 -
Identical Protein Groups 86,468 83,694 -
BioProject 54 47 -
BioSample 3,232 3,208 7
Assembly 144 137 3
PubChem BioAssay 29 29 -
Taxonomy 6 1 -

Comments and References:
VALIDATION LIST No. 193 (2020)
Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.
García-López M et al. (2019), doi: 10.3389/fmicb.2019.02083, PubMed: abstract
García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 type-strain genomes improves taxonomic classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.
Bakir MA et al. (2006b)
Bakir, M.A., Sakamoto, M., Kitahara, M. Matsumoto, M., and Benno, Y. "Bacteroides dorei sp. nov., isolated from human faeces." Int. J. Syst. Evol. Microbiol. (2006) 56:1639-1643.
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phocaeicola dorei meta-databases BacDive
Bacteroides dorei Bakir et al. 2006 taxonomy/phylogenetic Encyclopedia of life
GOLD Multi-Isolate Organism: Go0450942 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides dorei culture/stock collections Global Catalogue of Microorganisms
25 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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