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Taxonomy browser (Phocaeicola dorei)

Phocaeicola dorei

Taxonomy ID: 357276 (for references in articles please use NCBI:txid357276)
current name
Phocaeicola dorei (Bakir et al. 2006) García-López et al. 2020 in [VALIDATION LIST No. 193 (2020), García-López M et al. (2019)]
Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016
type strain of Bacteroides dorei: DSM:17855, JCM:13471, personal::175
Bacteroides sp. 175T
Bacteroides sp. 219
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidales incertae sedis; Phocaeicola
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 10,646 9,985 214
Protein 305,091 276,056 -
Structure 2 1 -
Genome 1 1 -
Popset 8 8 -
PubMed Central 368 368 -
Gene 8,862 4,501 -
SRA Experiments 180 156 -
Protein Clusters 2,978 2,978 -
Identical Protein Groups 57,322 53,999 -
Bio Project 30 23 -
Bio Sample 2,633 2,616 2
Bio Systems 320 320 -
Assembly 79 72 2
PubChem BioAssay 28 28 -
Taxonomy 6 1 -

Comments and References:

VALIDATION LIST No. 193 (2020)
Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.
García-López M et al. (2019), doi: 10.3389/fmicb.2019.02083, PubMed: abstract
García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.
Bakir MA et al. (2006b)
Bakir, M.A., Sakamoto, M., Kitahara, M. Matsumoto, M., and Benno, Y. "Bacteroides dorei sp. nov., isolated from human faeces." Int. J. Syst. Evol. Microbiol. (2006) 56:1639-1643.
Hahnke R et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., GarcIa-Lopez, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Goker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67:2081-2086.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacteroides dorei meta-databases BacDive
Bacteroides dorei Bakir et al. 2006 taxonomy/phylogenetic Encyclopedia of life
GOLD Multi-Isolate Organism: Go0450942 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides dorei culture/stock collections Global Catalogue of Microorganisms
25 records from provider organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]

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