Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Xanthomonas citri)

Xanthomonas citri

Taxonomy ID: 346 (for references in articles please use NCBI:txid346)
current name
Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Schaad et al. 2006 emend. Ah-You et al. 2009 emend. Constantin et al. 2016
homotypic synonym:
"Xanthomonas citri" (Hasse 1915) Dowson 1939, effective name 1)
"Xanthomonas citri" (ex Hasse 1915) Gabriel et al. 1989 emend. Schaad et al. 2006 (ex Hasse 1915) Gabriel et al. 1989, emend. Schaad et al. 2006, effective name 1)
Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Ah-You et al. 2009
Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 emend. Constantin et al. 2016
type strain of Xanthomonas citri: personal::3213, ATCC:49118, ICMP:15804, ICPB:10518, BCCM/LMG:9322
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Xanthomonas axonopodis pv. citri
heterotypic synonym
Xanthomonas campestris (pv. citri)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas citri group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 59,334 1,462 5,175
Protein 980,460 104,853 -
Structure 111 22 -
Genome 1 1 -
Popset 155 68 -
GEO Datasets 42 7 -
PubMed Central 942 881 -
Gene 37,550 4,400 -
SRA Experiments 460 22 -
Protein Clusters 2,911 2,911 -
Identical Protein Groups 183,174 78,727 -
BioProject 193 14 -
BioSample 610 26 21
Assembly 568 11 2
PubChem BioAssay 6 2 -
Taxonomy 69 1 -

Notes:

Comments and References:

Ah-You N et al. (2009)
Ah-You, N., Gagnevin, L., Grimont, P.A., Brisse, S., Nesme, X., Chiroleu, F., Bui Thi Ngoc, L., Jouen, E., Lefeuvre, P., Verniere, C., and Pruvost, O. "Polyphasic characterization of xanthomonads pathogenic to members of the Anacardiaceae and their relatedness to species of Xanthomonas." Int. J. Syst. Evol. Microbiol. (2009) 59:306-318.
Constantin EC et al. (2016)
Constantin, E.C., Cleenwerck, I., Maes, M., Baeyen, S., Van Malderghem, C., De Vos, P., and Cottyn, B. "Genetic characterization of strains named as Xanthomonas axonopodis pv. dieffenbachiae leads to a taxonomic revision of the X. axonopodis species complex." Plant Pathol. (2016) 65:792-806. [No PubMed record available.]
Dowson WJ (1939)
Dowson, W.J. "On the systematic position and generic names of the Gram negative bacterial plant pathogens." Zentrabl. Bakteriol. Parasitenk. Infektionskr. Hyg. Abt. II (1939) 100:177-193. [No PubMed record available.]
Gabriel DW et al. (1989)
Gabriel, D.W., Kingsley, M.T., Hunter, J.E., and Gottwyld, T. "Reinstatement of Xanthomonas citri (ex Hasse) and X. phaseoli (ex Smith) to species and reclassification of all X. campestris pv. citri strains." Int. J. Syst. Bacteriol. (1989) 39:14-22. [No PubMed record available.]
Hasse CH (1915)
Hasse, C.H. "Pseudomonas citri, the cause of citrus canker." J. Agr. Res. (1915) 4:97-100. [No PubMed record available.]
ICSB, Subcommittee on the Taxonomy of the Genus Pseudomonas and Related Organisms (1995)
ICSB, Subcommittee on the Taxonomy of the Genus Pseudomonas and Related Organisms "Minutes of the meetings, 17 and 20 September 1990, Osaka, Japan." Int. J. Syst. Bacteriol. (1995) 45:877-878. [No PubMed record available.] (Note: In Minute 5, the subcommittee rejects the proposal of Gabriel et al. (1989) to reinstate Xanthomonas citri and Xanthomonas phaseoli as species of the genus Xanthomonas. However, only the Judicial Commission has the authority to reject validly published taxonomic names.)
List of Changes in Taxonomic Opinion No. 6 (2007), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.65338-0
Euzeby, J.B. "Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2007) 57:1376.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Schaad NW et al. (2005)
Schaad, N.W., Postnikova, E., Lacy, G.H., Sechler, A., Agarkova, I., Stromberg, P.E., Stromberg, V.K., and Vidaver, A.K. "Reclassification of Xanthomonas campestris pv. citri (ex Hasse 1915) Dye 1978 forms A, B/C/D, and E as X. smithii subsp. citri (ex Hasse) sp. nov. nom. rev. comb. nov., X. fuscans subsp. aurantifolii (ex Gabriel 1989) sp. nov. nom. rev. comb. nov., and X. alfalfae subsp. citrumelo (ex Riker and Jones) Gabriel et al., 1989 sp. nov. nom. rev. comb. nov.; X. campestris pv. malvacearum (ex smith 1901) Dye 1978 as X. smithii subsp. smithii nov. comb. nov. nom. nov.; X. campestris pv. alfalfae (ex Riker and Jones, 1935) dye 1978 as X. alfalfae subsp. alfalfae (ex Riker et al., 1935) sp. nov. nom. rev.; and "var. fuscans" of X. campestris pv. phaseoli (ex Smith, 1987) Dye 1978 as X. fuscans subsp. fuscans sp. nov." Syst. Appl. Microbiol. (2005) 28:494-518. (Erratum: Syst. Appl. Microbiol. (2006) 29:690-695.)
Schaad NW et al. (2006), other link:http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7GVX-4M33W19-1&_user=6129429&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000000150&_version=1&_urlVersion=0&_userid=6129429&md5=dccbb5f6ade8644dc8201459997a77c4
Schaad, N.W., Postnikova, E., Lacy, G., Sechler, A., Agarkova, I., Stromberg, P.E., Stromberg, V.K., and Vidaver, A.K. "Emended classification of xanthomonad pathogens on citrus." Syst. Appl. Microbiol. (2006) 29:690-695. [No abstract available.] (Note: Erratum to Schaad et al. 2005.)
Young JM et al. (1991)
Young, J.M., Bradbury, J.F., Gardan, L., Gvozdyak, R.I., Stead, D.E., Takikawa, Y., and Vidaver, A.K. "Comment on the reinstatement of Xanthomonas citri (ex Hasse 1915) Gabriel et al. 1989 and X. phaseoli (ex Smith 1897) Gabriel et al. 1989: indication of the need for minimal standards for the genus Xanthomonas." Int. J. Syst. Bacteriol. (1991) 41:172-177. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Xanthomonas citri subsp. malvacearum meta-databases BacDive
Xanthomonas citri UnB-Xtec2D organism-specific BioCyc
Xanthomonas citri (ex Hasse 1915) Gabriel et al., 1989 taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0116552 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Xanthomonas citri culture/stock collections Global Catalogue of Microorganisms
2639763058: Xanthomonas citri LMG 7399 organism-specific Integrated Microbial Genomes
2 records from provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]