Taxonomy browser Taxonomy Browser (Clavibacter sepedonicus)

Entrez records
Database name	Direct links	Subtree links	Links from type
BioProject	7	7	-
BioSample	52	52	-
Gene	6,861	6,861	-
Identical Protein Groups	5,391	5,391	-
Nucleotide	5,267	5,267	145
PubChem BioAssay	1	1	-
PMC	26	26	-
Protein	16,941	16,941	-
SRA	49	49	-
Taxonomy	1	1	-

Clavibacter sepedonicus

Taxonomy ID: 31964 (for references in articles please use ncbitaxon:31964)

current name

Clavibacter sepedonicus (Spieckermann and Kotthoff 1914) Li et al. 2018 in [Li X et al. (2018)]

homotypic synonym:

Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al. 1984

"Pseudobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949 , effective name¹⁾

Corynebacterium michiganense subsp. sepedonicum (Spieckermann and Kotthoff 1914) Carlson and Vidaver 1982

"Mycobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949 , effective name²⁾

"Phytomonas sepedonica" (Spieckermann and Kotthoff 1914) Magrou 1937 , effective name³⁾

"Aplanobacter sepedonicum" (sic) (Spieckermann and Kotthoff 1914) Smith 1920 , effective name⁴⁾

Corynebacterium sepedonicum (Spieckermann and Kotthoff 1914) Skaptason and Burkholder 1942 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Corynebacterium sepedonicum: ATCC : 33113 , CCUG : 23908 , CFBP : 2049 , CIP : 104844 , DSM : 20744 , ICMP : 2535 , JCM : 9667 , BCCM/LMG : 2889 , NCPPB : 2137 , VKM:Ac : 1405

basionym:

"Bacterium sepedonicum" Spieckermann and Kotthoff 1914

Clavibacter sepedonicus (Davis et al. 1984) Nouioui et al. 2018 , nom. illeg.⁵⁾ in in [Nouioui I et al. (2018c)] , [Validation List No. 184 (2018)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage(full): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Clavibacter

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) 'Nom. illeg.' (= nomen illegitimum, = illegitimate name) refers to a validly published name that is not in accordance with the particular rules of its relevant Code of Nomenclature.

Comments and References:

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Nouioui I et al. (2018c) , doi: 10.3389/fmicb.2018.02007 , Pubmed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Validation List No. 184 (2018) , Pubmed: abstract

Validation List No. 184: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(11):3379-3393.

Li X et al. (2018) , doi: 10.1099/ijsem.0.002492 , Pubmed: abstract

Li, X., Tambong, J., Yuan, K.X., Chen, W., Xu, H., Levesque, C.A., and De Boer, S.H. "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses." Int. J. Syst. Evol. Microbiol. (2018) 68(1):234-240.

Davis MY et al. (1984)

Davis, M.J., Gillaspsie Jr., A.G., Vidaver, A.K., and Harris, R.W. "Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermudagrass stunting disease." Int. J. Syst. Bacteriol. (1984) 34:107-117. [No PubMed record available.]

Carlson RR & Vidaver AK (1982)

Carlson, R.R., and Vidaver, A.K. "Taxonomy of Corynebacterium plant pathogens, including a new pathogen of wheat, based on polyacrylamide gel electrophoresis of cellular proteins." Int. J. Syst. Bacteriol. (1982) 32(3):315-326. [No PubMed record available.]

Oren A & Garrity GM (2018)

Oren, A., & Garrity, G.M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 68, part 1, of the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:979-981. [N.B.: List Editors state that the names Clavibacter capsici, Clavibacter insidiosus, Clavibacter nebrasksensis, Clavibacter sepedonicus and Clavibacter tesselarius proposed by Li et al. are illegitimate as they contravene Rule 34a and 50a of the International Code of Nomenclature of Prokaryotes. The use of illegitimate names contravenes Rule 51a. Counterargument is presented by Tindall (2019).]

Tindall BJ (2019b)

Tindall, B.J. "The role of incorrect citation of the International Code of Nomenclature of Prokaryotes and subsequent misinterpretation in causing unnecessary nomenclatural confusion." Int. J. Syst. Evol. Microbiol. (2019) 69(8):2621-2625.

Young JM et al. (1996)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [N.B.: reference with type strain information]

Zgurskaya HI et al. (1993) (reference relating to orthographic revision)

Zgurskaya, H.I., Evtushenko, L.I., Akimov, V.N., and Kalakoutskii. L.V. "Rathayibacter gen. nov., including the species Rathayibacter rathayi comb. nov., Rathayibacter tritici comb. nov., Rathayibacter iranicus comb. nov., and six strains from annual grasses." Int. J. Syst. Bacteriol. (1993) 43:143-149. [No PubMed record available.]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

LinkOut	Subject	LinkOut Provider
Clavibacter sepedonicus type strain (BD-ID 7294)	meta-databases	BacDive
Clavibacter michiganensis ATCC 33113	organism-specific	BioCyc
Clavibacter michiganensis ATCC 33113	organism-specific	BioCyc
Clavibacter michiganensis ATCC 33113	organism-specific	BioCyc
Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al., 1984	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 2 Organisms	organism-specific	Genomes On Line Database
Clavibacter michiganensis subsp. sepedonicus	culture/stock collections	Global Catalogue of Microorganisms
642555124: Clavibacter michiganensis sepedonicus ATCC 33113	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Clavibacter sepedonicus \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Clavibacter sepedonicus type strain (SI-ID 1833)	meta-databases	StrainInfo, Leibniz Institute DSMZ

Clavibacter sepedonicus

Notes:

Comments and References:

External Information Resources (NCBI LinkOut)