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Taxonomy browser (Chlamydomonas reinhardtii)

Chlamydomonas reinhardtii

Taxonomy ID: 3055 (for references in articles please use NCBI:txid3055)
Scientific name: Chlamydomonas reinhardtii P.A.Dangeard
epitype of Chlamydomonas reinhardtii: UTEX:90
includes: Chlamydomonas reinhardtii strain CC-1373
NCBI BLAST® name: green algae
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Chlamydomonas smithii R.W.Howshaw & H.Ettl
  reference material of Chlamydomonas smithii: SAG:53.72
reference material of Chlamydomonas smithii: SAG:54.72
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
   Entrez records   
Database name Subtree links Direct links
Nucleotide 263,645 263,645
Protein 37,754 37,754
Structure 181 181
Genome 1 1
Popset 77 77
Conserved Domains 2 2
GEO Datasets 1,062 1,062
UniGene 7,577 7,577
PubMed Central 8,632 8,632
Gene 14,490 14,490
SRA Experiments 2,472 2,472
Protein Clusters 6,978 6,978
Identical Protein Groups 31,366 31,366
Bio Project 849 849
Bio Sample 2,436 2,436
Bio Systems 577 577
Assembly 3 3
Probe 349 349
PubChem BioAssay 10 10
Taxonomy 2 1

Comments and References:

Nota BeneProeschold T et al. 2005
Proeschold T, Harris EH, Coleman AW. 2005. Portrait of a species: Chlamydomonas reinhardtii. Genetics. 170(4): 1601-1610.

Reference to PubMed documentNozaki H et al. 2002
Nozaki H, Onishi K, Morita E. 2002. Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). Journal of Molecular Evolution. 55(4): 414-30.

Proeschold T et al. 2001
Proeschold T, Marin B, Schloesser UG and Melkonia M. 2001. Molecular phylogeny and taxonomic revision of Chlamydomonas (Chlorophyta). I. Emendation of Chlamydomonas Ehrenberg and Chloromonas Gobi, and description of Oogamochlamys gen. nov. and Lobochlamys gen. nov. Protist 152: 265-300.

Reference to PubMed documentHoshaw RW & Ettl H 1966
Hoshaw RW and Ettl H. 1966. Chlamydomonas smithii sp. nov. - a chlamydomonad interfertile with Chlamydomonas reinhardtii. Journal of Phycology 2: 93-96.

Genome Information

Go to NCBI genomic BLAST® page for Chlamydomonas reinhardtii
Genome view: 17 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
JGI - Joint Genome Institute, U.S. Department of Energy
19,995 45,312 - - 2,749,100 2,814,407
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 223 13,662 - 13,885
Totals per type
19,995 45,312 223 13,662 2,749,100 2,828,292

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chlamydomonas reinhardtii taxonomy/phylogenetic AlgaeBase
Chlamydomonas reinhardtii organism-specific BioCyc
dryaddb supplemental materials Dryad Digital Repository
Chlamydomonas reinhardtii P. A. Dangeard taxonomy/phylogenetic Encyclopedia of life
519 records from this provider organism-specific Genomes On Line Database
Chlamydomonas reinhardtii culture/stock collections Global Catalogue of Microorganisms
2 records from this provider organism-specific Integrated Microbial Genomes
Chlamydomonas reinhardtii Dangeard, 1899 taxonomy/phylogenetic Integrated Taxonomic Information System
EST Index clones/clone libraries Kazusa DNA Research Institute
Chlamydomonas reinhardtii taxonomy/phylogenetic Lifemap
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Chlamydomonas reinhardtii taxonomy/phylogenetic TreeBase
WebScipio: Chlamydomonas reinhardtii organism-specific WebScipio - eukaryotic gene identification
diArk: Chlamydomonas reinhardtii organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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