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Taxonomy browser (Pseudomonas putida)

Pseudomonas putida

Taxonomy ID: 303 (for references in articles please use NCBI:txid303)
current name
Pseudomonas putida (Trevisan 1889) Migula 1895
type strain of Pseudomonas putida: ATCC:12633, CCUG:12690, CFBP:2066, CIP:52.191, DSM:291, HAMBI:7, IFO:14164, JCM:13063, JCM:20120, BCCM/LMG:2257, NBRC:14164, NCAIM B.01634, NCCB:68020, NCCB:72006, NCTC:10936, IAM:1236, ICPB:2963, NCIMB:9494
homotypic synonym:
"Bacillus fluorescens putidus" Flugge 1886, effective name 1)
"Bacillus putidus" Trevisan 1889, effective name 1)
includes:
Pseudomonas arvilla C-1
Pseudomonas putida HK5
Pseudomonas sp. ACP_03
Pseudomonas sp. BW11M1
Pseudomonas sp. CT363
Pseudomonas sp. ECT1/2016
Pseudomonas sp. ECT2/2016
Pseudomonas sp. ETC3/2016
Pseudomonas sp. FAR1/2016
Pseudomonas sp. PT1/2016
Pseudomonas sp. TAU2/2016
Pseudomonas sp. UF1/2016
Pseudomonas sp. DRA525
Pseudomonas sp. GM4FR
Pseudomonas sp. KDB25
Pseudomonas sp. KDS 6
Pseudomonas sp. PSE3
Pseudomonas sp. PX-A-Ps.sp2
Pseudomonas sp. TC29-1
bacterium ASFP-1
bacterium MASFP-4
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Pseudomonas eisenbergii" Migula 1900, effective name 1)
heterotypic synonym
"Pseudomonas convexa" Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas incognita" Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas ovalis" Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas rugosa" (Wright 1895) Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas striata" Chester 1901, effective name 1)
heterotypic synonym
Pseudomonas arvilla
heterotypic synonym
Arthrobacter siderocapsulatus Dubinin (sic) and Zhdanov 1975
homotypic synonym:
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980), nom. approb. 2)
type strain of Arthrobacter siderocapsulatus: NCIMB:11286, BKM-B:N1122
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 51,038 40,126 171
Protein 1,074,999 946,419 -
Structure 694 551 -
Genome 1 1 -
Popset 635 635 -
GEO Datasets 960 411 -
PubMed Central 11,314 11,314 -
Gene 79,964 11,800 -
SRA Experiments 1,485 942 -
Protein Clusters 8,776 8,776 -
Identical Protein Groups 499,290 471,214 -
Bio Project 469 264 -
Bio Sample 2,062 1,525 10
Bio Systems 3,099 253 -
Assembly 208 161 3
Probe 8 5 -
PubChem BioAssay 107 104 -
Taxonomy 40 1 -

Notes:

Comments and References:

Chum J et al. (2001)
Chun, J., Rhee, M.S., Han, J.I., Bae, K.S. "Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL." Int. J. Syst. Evol. Microbiol. (2001) 51:169-170
Hill LR et al. (1984) (reference relating to orthographic revision)
Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34:508-511. [No PubMed record available.]
Meyer JM et al. (2007)
Meyer, J.-M., Gruffaz, C., Tulkki, T., and Izard, D. "Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida." Int. J. Syst. Evol. Microbiol. (2007) 57:2543-2556.
Skerman VBD et al. (1980) (Arthrobacter siderocapsulatus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Pseudomonas putida)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Yamamoto S & Harayama S (1998)
Yamamoto, S., and Harayama, S. "Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes." Int. J. Syst. Bacteriol. (1998) 48:813-819.
Zhdanov AV & Dubinina GA (1975)
Zhdanov, A.V., and Dubinina, G.A. "[Arthrobacter siderocapsulatus isolated from lake water.]" Mikrobiologiya (1975) 44:714-719. [in Russian]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas putida meta-databases BacDive
5 records from this provider organism-specific BioCyc
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
38 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas putida culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
51 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas putida taxonomy/phylogenetic Lifemap
3 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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