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Taxonomy browser (Pseudomonas putida)

Pseudomonas putida

Taxonomy ID: 303 (for references in articles please use NCBI:txid303)
current name
Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Pseudomonas putida: ATCC:12633, CCUG:12690, CFBP:2066, CIP:52.191, DSM:291, HAMBI:7, IFO:14164, JCM:13063, JCM:20120, BCCM/LMG:2257, NBRC:14164, NCAIM B.01634, NCCB:68020, NCCB:72006, NCTC:10936, IAM:1236, ICPB:2963, NCIMB:9494
homotypic synonym:
"Bacillus fluorescens putidus" Flügge 1886, effective name 1)
"Bacillus putidus" Trevisan 1889, effective name 2)
includes:
Pseudomonas arvilla C-1
Pseudomonas putida HK5
Pseudomonas sp. 11CM-F1
Pseudomonas sp. 11CM-S1
Pseudomonas sp. ACP_03
Pseudomonas sp. B21-029
Pseudomonas sp. BW11M1
Pseudomonas sp. CT363
Pseudomonas sp. ECT1/2016
Pseudomonas sp. ECT2/2016
Pseudomonas sp. ETC3/2016
Pseudomonas sp. FAR1/2016
Pseudomonas sp. PT1/2016
Pseudomonas sp. TAU2/2016
Pseudomonas sp. PX-A-Ps.sp2
bacterium ASFP-1
bacterium MASFP-4
Pseudomonas sp. UF1/2016
Pseudomonas sp. DRA525
Pseudomonas sp. GM4FR
Pseudomonas sp. KDB25
Pseudomonas sp. KDS 6
Pseudomonas sp. PSE3
Pseudomonas sp. TC29-1
Pseudomonas sp. WMQ-7
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Pseudomonas eisenbergii" Migula 1900, effective name 3)
heterotypic synonym
"Pseudomonas convexa" Chester 1901, effective name 4)
heterotypic synonym
"Pseudomonas incognita" Chester 1901, effective name 5)
heterotypic synonym
"Pseudomonas ovalis" Chester 1901, effective name 6)
heterotypic synonym
"Pseudomonas rugosa" (Wright 1895) Chester 1901, effective name 7)
heterotypic synonym
"Pseudomonas striata" Chester 1901, effective name 8)
heterotypic synonym
Pseudomonas arvilla
heterotypic synonym
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Arthrobacter siderocapsulatus: NCIMB:11286, BKM-B:N1122, DSM:7314, BCCM/LMG:16206
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 70,297 60,860 178
Protein 1,449,214 1,317,454 -
Structure 736 570 -
GEO Datasets 1,278 517 -
PubMed Central 14,851 14,851 -
Gene 80,064 11,800 -
SRA Experiments 3,256 2,466 -
Protein Clusters 8,776 8,776 -
Identical Protein Groups 840,646 816,052 -
BioProject 706 457 -
BioSample 3,668 2,883 31
Datasets Genome 542 492 -
PubChem BioAssay 123 121 -
Taxonomy 38 1 -

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Chum J et al. (2001)
Chun, J., Rhee, M.S., Han, J.I., Bae, K.S. "Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL." Int. J. Syst. Evol. Microbiol. (2001) 51:169-170
Hill LR et al. (1984) (reference relating to orthographic revision)
Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34(4):508-511. [No PubMed record available.]
Meyer JM et al. (2007)
Meyer, J.-M., Gruffaz, C., Tulkki, T., and Izard, D. "Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida." Int. J. Syst. Evol. Microbiol. (2007) 57:2543-2556.
Yamamoto S & Harayama S (1998)
Yamamoto, S., and Harayama, S. "Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes." Int. J. Syst. Bacteriol. (1998) 48:813-819.
Zhdanov AV & Dubinina GA (1975)
Zhdanov, A.V., and Dubinina, G.A. "[Arthrobacter siderocapsulatus isolated from lake water.]" Mikrobiologiya (1975) 44:714-719. [in Russian]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas putida meta-databases BacDive - Free access to bacterial information database
24 records from this provider organism-specific BioCyc
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: 152 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas putida culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
81 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas putida taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Pseudomonas putida | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
3 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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