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Taxonomy browser (Vitis vinifera)

Vitis vinifera

Taxonomy ID: 29760 (for references in articles please use NCBI:txid29760)
Scientific name: Vitis vinifera L.
homotypic synonym: Vitis vinifera subsp. vinifera
Genbank common name: wine grape
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Viteae; Vitis
   Entrez records   
Database name Subtree links Direct links
Nucleotide 356,269 355,684
Nucleotide EST 446,678 446,674
Nucleotide GSS 229,272 229,272
Protein 95,966 95,580
Structure 27 27
Genome 1 1
Popset 247 247
GEO Datasets 4,498 4,464
UniGene 32,193 32,193
PubMed Central 6,885 6,885
Gene 39,904 39,904
SRA Experiments 3,827 3,786
Protein Clusters 14,016 14,016
Identical Protein Groups 77,500 77,477
Bio Project 284 284
Bio Sample 4,959 4,866
Bio Systems 271 271
Assembly 7 7
Clone DB 104,198 104,198
Probe 3,977 3,977
PubChem BioAssay 80 80
Taxonomy 3 1

Comments and References:

Nota BeneGRIN (Jun 16, 2011)
Name verified on 16 June 2011 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneFlora of China - Vitaceae
Chen Zhiduan, Hui Ren & Jun Wen. Vitaceae. 2007. In Wu, Z. Y., P. H. Raven & D. Y. Hong, eds. Flora of China. Vol. 12 (Hippocastanaceae through Theaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org

Nota BeneFNA - Vitaceae
Moore MO and Wen J. 2016. Vitaceae Jussieu. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Volume 12: Magnoliophyta: Vitaceae to Garryaceae. New York and Oxford. On-line version.


Genome Information

Go to NCBI genomic BLAST page for Vitis vinifera
Genome view: 20 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND WGS ALL
CRIBI - Centro di Ricerca Interdipartimentale per le Biotecnologie Innovative
- 1,280,784 1,280,784
GSC - Genoscope
77,237 5,938,698 6,015,935
IGA - Istituto di Genomica Applicata, Italy
- 1,525,257 1,525,257
Totals per type
77,237 8,744,739 8,821,976

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Vitis vinifera taxonomy taxonomy/phylogenetic Arctos Specimen Database
Vitis vinifera L. taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
649410508: Vitis vinifera PN40024 organism-specific Integrated Microbial Genomes
Vitis vinifera L. taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Vitis vinifera taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Vitis vinifera taxonomy/phylogenetic The International Plant Names Index
Vitis vinifera L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Vitis vinifera organism-specific WebScipio - eukaryotic gene identification
6 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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