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Taxonomy browser (Photorhabdus asymbiotica)

Photorhabdus asymbiotica

Taxonomy ID: 291112 (for references in articles please use NCBI:txid291112)
Scientific name: Photorhabdus asymbiotica
current: Photorhabdus asymbiotica
Inherited blast name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 150 77
Protein 14,261 12,882
Structure 6 1
Genome 1 1
Popset 7 7
PubMed Central 178 178
Gene 4,615 4,614
SRA Experiments 7 5
Protein Clusters 2,741 2,741
Identical Protein Groups 5,627 5,551
Bio Project 5 2
Bio Sample 11 3
Bio Systems 255 255
Assembly 2 2
Taxonomy 3 3
Taxonomy 3 1

Comments and References:

Reference to PubMed documentAkhurst RJ et al. (2004)
Akhurst, R.J., Boemare, N.E., Janssen, P.H., Peel, M.M., Alfredson, D.A., and Beard, C.E. "Taxonomy of Australian clinical isolates of the genus Photorhabdus and proposal of Photorhabdus asymbiotica subsp. asymbiotica subsp. nov. and P. asymbiotica subsp. australis subsp. nov." Int. J. Syst. Evol. Microbiol. (2004) 54:1301-1310. Published online 19 July 2004. doi:10.1099/ijs.0.03005-0

Reference to PubMed documentFischer-Le Saux M et al. (1999)
Fischer-Le Saux, M., Viallard, V., Brunel, B., Normand, P., and Boemare, N.E. "Polyphasic classification of the genus Photorhabdus and proposal of new taxa: P. luminescens subsp. luminescens subsp. nov., P. luminescens subsp. akhurstii subsp. nov., P. luminescens subsp. laumondii subsp. nov., P. temperata sp. nov., P. temperata subsp. temperata subsp. nov. and P. asymbiotica sp. nov." Int. J. Syst. Bacteriol. (1999) 49:1645-1656.

Reference to PubMed documentMachado RAR et al. (2018)
Machado, R.A.R., Wuthrich, D., Kuhnert, P., Arce, C.C.M., Thonen, L., Ruiz, C., Zhang, X., Robert, C.A.M., Karimi, J., Kamali, S., Ma, J., Bruggmann, R., and Erb, M. "Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodeisp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov." Int. J. Syst. Evol. Microbiol. (2018) 68:2664–2681.


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK ALL
SC - The Sanger Center
3 3
Totals per type
3 3

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: Go0044320 organism-specific Genomes On Line Database
2784746756: Photorhabdus asymbiotica asymbiotica DSM 15149 organism-specific Integrated Microbial Genomes
Photorhabdus asymbiotica (taxon passport) culture/stock collections StrainInfo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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