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Taxonomy browser (Bacteroides ovatus)

Bacteroides ovatus

Taxonomy ID: 28116 (for references in articles please use NCBI:txid28116)
Scientific name: Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb. 1)
type strain of Bacteroides ovatus: ATCC:8483
type strain of Bacteroides ovatus: BCRC:10623
type strain of Bacteroides ovatus: CCUG:4943
type strain of Bacteroides ovatus: CIP:103756
type strain of Bacteroides ovatus: DSM:1896
type strain of Bacteroides ovatus: JCM:5824
type strain of Bacteroides ovatus: NCTC:11153
homotypic synonym: "Pasteurella ovata" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
homotypic synonym: "Pseudobacterium ovatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
homotypic synonym: "Bacteroides fragilis subsp. ovatus" (Eggerth and Gagnon 1933) Holdeman and Moore 1970, effective name 2)
includes: bacterium NLAE-zl-C11
includes: bacterium NLAE-zl-C34
includes: bacterium NLAE-zl-C500
includes: bacterium NLAE-zl-C57
includes: bacterium NLAE-zl-H304
includes: bacterium NLAE-zl-H361
includes: bacterium NLAE-zl-H59
includes: bacterium NLAE-zl-H73
Inherited blast name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
   Entrez records   
Database name Subtree links Direct links
Nucleotide 8,582 6,386
Protein 266,758 217,947
Structure 73 19
Genome 1 1
Popset 13 13
GEO Datasets 673 29
PubMed Central 650 650
Gene 5,022 5,022
SRA Experiments 108 20
Protein Clusters 4,507 4,507
Identical Protein Groups 61,647 51,846
Bio Project 50 41
Bio Sample 156 68
Bio Systems 157 157
Assembly 44 36
Probe 10 10
PubChem BioAssay 38 37
Taxonomy 9 1

Notes:

Comments and References:

Nota BeneCato EP & Johnson JL (1976)
Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]

Reference to PubMed documentEggerth AH & Gagnon BH (1933)
http://jb.asm.org/content/25/4/389.long
Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]

Reference to PubMed documentHahnke R et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., GarcIa-Lopez, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Goker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.

Holdeman LV & Moore WEC (1970b)
Holdeman, L.V., and Moore, W.E.C. "Bacteroides." In: E.P. Cato, C.S. Cummins, L.V. Holdeman, J.L. Johnson, W.E.C. Moore, R.M. Smibert, and L.DS. Smith (eds.), Outline of Clinical Methods in Anaerobic Bacteriology, 2nd revision, Virginia Polytechnic Institute, Anaerobe Laboratory, Blacksburg, Virginia, (1970). pp. 33-44. [No PubMed record available.]

Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

Nota BeneList of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67:2081-2086.

Prevot AR (1938)
Prevot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 WGS ALL
WUGSC - Washington University, Genome Sequencing Center
1,070,847 2,257 1,073,104
Totals per type
1,070,847 2,257 1,073,104

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacteroides ovatus meta-databases BacDive
Bacteroides ovatusKLE1656 organism-specific BioCyc
Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
27 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides ovatus culture/stock collections Global Catalogue of Microorganisms
10 records from this provider organism-specific Integrated Microbial Genomes
Bacteroides ovatus (taxon passport) culture/stock collections StrainInfo
Notes:
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Information from sequence entries

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