Taxonomy browser (Halobacterium salinarum)

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Taxonomy browser (Halobacterium salinarum)

Halobacterium salinarum

Taxonomy ID: 2242 (for references in articles please use NCBI:txid2242)

current name

Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980) emend. Gruber et al. 2004, nom. approb.¹⁾

type strain of Halobacterium salinarum: ATCC :33171, CIP:104033, DSM :3754, JCM :8978, NBRC :102687, NCIMB:764, NRC:34002, VKM :B-1769, CGMCC :1.3519

includes:

Halobacterium sp. BRTH1

Halobacterium sp. HPC1-2

NCBI BLAST name: euryarchaeotes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Bacillus halobius ruber" Klebahn 1919, effective name²⁾

heterotypic synonym

"Pseudomonas salinaria" Harrison and Kennedy 1922, effective name³⁾

heterotypic synonym

"Serratia salinaria" (Harrison and Kennedy 1922) Bergey et al. 1923, effective name⁴⁾

heterotypic synonym

"Serratia cutirubrum" Lochhead 1934, effective name⁵⁾

heterotypic synonym

Halobacterium salinarium

homotypic synonym:

"Flavobacterium (subgen. Halobacterium) salinarium" (Harrison and Kennedy 1922) Elazari-Volcani 1940, effective name⁶⁾

heterotypic synonym

"Bacterium halobium" Petter 1931, effective name⁷⁾

heterotypic synonym

"Flavobacterium (subgen. Halobacterium) halobium" (Petter 1931) Elazari-Volcani 1940, effective name⁸⁾

heterotypic synonym

"Halobacter salinaria" (Harrison and Kennedy 1922) Anderson 1954, effective name⁹⁾

heterotypic synonym

Halobacterium cutirubrum (Lochhead 1934) Elazari-Volcani 1957 (Approved Lists 1980), nom. approb.¹⁰⁾

type strain of Halobacterium cutirubrum: ATCC :33170, DSM :669, NCCB:81095, NRC:34001, VKM :B-1808

heterotypic synonym

Halobacterium halobium (Petter 1931) Elazari-Volcani 1957 (Approved Lists 1980), nom. approb.¹¹⁾

type strain of Halobacterium halobium: NCCB:33035, NCIMB:8720

heterotypic synonym

Halobacterium piscisalsi Yachai et al. 2008

type strain of Halobacterium piscisalsi: BCC:24372, JCM :14661, PCU:302, personal::HPC1-2

Lineage( full ): cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	4,252	3,796	95
Protein	40,200	26,223	-
Structure	222	122	-
Conserved Domains	1	-	-
GEO Datasets	2,665	540	-
PubMed Central	2,741	2,741	-
Gene	19,288	10,276	-
SRA Experiments	308	244	-
Protein Clusters	1,869	1,869	-
Identical Protein Groups	19,643	18,953	-
BioProject	141	39	-
BioSample	546	478	5
Datasets Genome	31	27	-
PubChem BioAssay	2	2	-
Taxonomy	8	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
9) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
10) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
11) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

image:Halobacterium salinarum

Image by Helga Stan-Lotter & Sergiu Fendrihan from Wikimedia Commons under a CC BY-SA license.
* Image may not have been verified for accuracy by NCBI Taxonomy.

H. salinarum = H. cutirubrum = H. halobium

From the LBSN web site:"Note: No properties that differentiate Halobacterium cutirubrum (Lochhead 1934) Elazari-Volcani 1957 (Approved Lists 1980) from Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (ApprovedLists 1980) and justify assignment of these strains to separate species has been described.

Elazari-Volcani B (1940)

Elazari-Volcani, B. "Studies on the microflora of the Dead Sea." Doctoral thesis (1940). Hebrew University, Jerusalem, pp. 1-116 and i-xiii. [No PubMed record available.]

Elazari-Volcani B (1957)

Elazari-Volcani, B. "Genus XII. Halobacterium Elazari-Volcani, 1940." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (ed.), Bergey's Manual of Determinative Bacteriology, seventh edition (1957). The Williams & Wilkins Co., Baltimore, pp. 207-212. [No PubMed record available.]

Gruber C et al. (2004)

Gruber, C., Legat, A., Pfaffenhuemer, M., Radax, C., Weidler, G., Busse, H.-J., and Stan-Lotter, H. "Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum." Extremophiles (2004) 8:431-439. Published online 30 July 2004. DOI: 10.1007/s00792-004-0403-6

Harrison FC & Kennedy ME (1922)

Harrison, F.C., and Kennedy, M.E. "The red discolouration of cured codfish." Proc. Trans. R. Soc. Can. Sect. V (1922) 16:101-152. [No PubMed record available.]

Klebahn H (1919)

Klebahn, H. "Die Schadlinge des Klippfisches. Ein Beitrag zur Kenntnis der salzliebenden Organismen." Mitt. Inst. Allg. Bot. Hambg. (1919) 4:11-69. [No PubMed record available.]

List of Changes in Taxonomic Opinion No. 2 (2005), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.63884-0

Euzeby, J. "List of Changes in Taxonomic Opinion no. 2." Int. J. Syst. Evol. Microbiol. (2005) 55:1403-1404.

Lochhead AG (1934)

Lochhead, A.G. "Bacteriological studies on the red discolouration of salted hides." Can. J. Res. (1934) 10:275-286. [No PubMed record available.]

Minegishi H et al. (2012b)

Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Tanasupawat, S., Visessanguan, W., and Usami, R. "Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957." Int. J. Syst. Evol. Microbiol. (2012) 62:2160-2162.

Petter JFM (1931)

Petter, J.F.M. "On bacteria of salted fish." Proc. K. Ned. Akad. Wet. Amsterdam (1931) 34:1417-1423. [No PubMed record available.]

Pfeiffer F et al. (2019), other link:https://mra.asm.org/content/8/28/e00429-19

Pfeiffer, F., Marchfelder, A., Habermann, B., and Dyall-Smith, M.L. "The genome sequence of the Halobacterium salinarum type strain is closely related to that of laboratory strains NRC-1 and R1." Microbiol. Resour. Announc. (2019) 8:e00429-19.

Skerman VBD et al. (1980) (Halobacterium cutirubrum)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Skerman VBD et al. (1980) (Halobacterium halobium)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Skerman VBD et al. (1980) (Halobacterium salinarum)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Ventosa A & Oren A (1996)

Ventosa, A., and Oren, A. "Halobacterium salinarum nom. corrig., a name to replace Halobacterium salinarium (Elazari-Volcani) and to include Halobacterium halobium and Halobacterium cutirubrum." Int. J. Syst. Bacteriol. (1996) 46:347. [No PubMed record available.]

Yachai M et al. (2008)

Yachai, M., Tanasupawat, S., Itoh, T., Benjakul, S., Visessanguan, W., and Valyasevi, R. "Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand." Int. J. Syst. Evol. Microbiol. (2008) 58:2136-2140.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Halobacterium salinarum	meta-databases	BacDive - Free access to bacterial information database
4 records from this provider	organism-specific	BioCyc
Halobacterium cutirubrum (Lochhead 1934) Elazari-Volcani 1957 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 4 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Halobacterium salinarum	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
4 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Halobacterium salinarum (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Halobacterium halobium	taxonomy/phylogenetic	TreeBase
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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