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Taxonomy browser (Bifidobacterium longum)

Bifidobacterium longum

Taxonomy ID: 216816 (for references in articles please use NCBI:txid216816)
current name
Bifidobacterium longum Reuter 1963
type strain of Bifidobacterium longum: CGMCC:1.2186, ATCC:15707, BCRC:11847, CCUG:28903, CIP:64.62, DSM:20219, HAMBI:554, JCM:1217, KCTC:3128, BCCM/LMG:10497, BCCM/LMG:13197, NCAIM B.01819, NCFB:2259, NCIMB:702259, NCTC:11818
homotypic synonym:
Bifidobacterium longum subsp. suis (Matteuzzi et al. 1971) Mattarelli et al. 2008 emend. Nouioui et al. 2018, emended name 1) in [Nouioui I et al. (2018b)]
includes:
Bifidobacterium sp. 12_1_47BFAA
NCBI BLAST name: high GC Gram+
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 67,699 39,126 875
Protein 1,574,380 1,125,965 -
Structure 83 30 -
Genome 1 1 -
Popset 103 95 -
Conserved Domains 1 1 -
GEO Datasets 313 137 -
PubMed Central 5,901 5,053 -
Gene 27,911 2,075 -
SRA Experiments 1,417 1,098 -
GEO Profiles 6,601 6,601 -
Protein Clusters 2,721 2,721 -
Identical Protein Groups 225,986 200,605 -
Bio Project 238 106 -
Bio Sample 4,196 3,604 45
Bio Systems 1,804 155 -
Assembly 938 670 12
Probe 73 34 -
PubChem BioAssay 38 23 -
Taxonomy 38 1 -

Notes:

Comments and References:

Nouioui I et al. (2018b), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Bahaka D et al. (1993)
Bahaka, D., Neut, C., Khattabi, A., Monget, D., and Gavini, F. "Phenotypic and genomic analyses of human strains belonging or related to Bifidobacterium longum, Bifidobacterium infantis, and Bifidobacterium breve." Int. J. Syst. Bacteriol. (1993) 43:565-573.
Reuter G (1963)
Reuter, G. "Vergleichenden Untersuchung uber die Bifidus-Flora im Sauglings und Erwachsenenstuhl." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. I (1963) 191:486-507 (in German). [No PubMed record available.]
Sakata S et al. (2002)
Sakata, S., Kitahara, M., Sakamoto, M., Hayashi, H., Fukuyama, M., and Benno, Y. "Unification of Bifidobacterium infantis and Bifidobacterium suis as Bifidobacterium longum." Int. J. Syst. Evol. Microbiol. (2002) 52:1945-1951. Published online 14 March 2002 DOI 10.1099/ijs.0.02221-0.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bifidobacterium longum meta-databases BacDive
6 records from this provider organism-specific BioCyc
Bifidobacterium longum Reuter 1963 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
31 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bifidobacterium longum culture/stock collections Global Catalogue of Microorganisms
14 records from provider organism-specific Integrated Microbial Genomes
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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