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Taxonomy browser (Streptomyces scabiei)

Streptomyces scabiei

Taxonomy ID: 1930 (for references in articles please use NCBI:txid1930)
current name
Streptomyces scabiei corrig. (ex Thaxter 1891) Lambert and Loria 1989
type strain of Streptomyces scabiei: personal::RL-34, ATCC:49173, CIP:105438, DSM:41658, ICMP:12542, JCM:7914
Streptomyces sp. DSM 41005
Streptomyces sp. NBRC 12914
Streptomyces sp. DSM 41114
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Streptomyces scabies" (Thaxter 1891) Waksman and Henrici 1948, effective name 1)
homotypic synonym:
"Oospora scabies" Thaxter 1891, effective name 1)
"Actinomyces scabies" (Thaxter 1891) Gussow 1914, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 33,907 33,899 28
Protein 99,877 90,678 -
Structure 20 4 -
Genome 1 1 -
Popset 62 62 -
Conserved Domains 1 1 -
GEO Datasets 54 54 -
PubMed Central 485 485 -
Gene 18,684 1 -
SRA Experiments 58 58 -
Protein Clusters 5,305 5,305 -
Identical Protein Groups 72,917 70,197 -
BioProject 20 19 -
BioSample 70 69 -
Assembly 17 16 -
PubChem BioAssay 30 30 -
Taxonomy 3 1 -


Comments and References:

Arahal DR (in press_2020)
Arahal, D.R. "Opinions 97, 98 and 99." Int. J. Syst. Evol. Microbiol. (in press) [NB: According to Opinion 97, the request for the conservation of the name Streptomyces scabies is denied, allowing the continued use of the correction Streptomyces scabiei. Opinions 98 and 99 conclude that in the absence of associated authentic type material, the names Bacillus aeolius and Pectinatus portalensis, respectively, are not validly published.]
Labeda DP (2011)
Labeda, D.P. "Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces." Int. J. Syst. Evol. Microbiol. (2011) 61:2525-2531.
Lambert DH & Loria R (1989)
Lambert, D.H., and Loria, R. "Streptomyces scabies sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1989) 39:387-392. [No PubMed record available.]
Lambert DH et al. (2007)
Lambert, D.H., Loria, R., Labeda, D.P., and Saddler, G.S. "Recommendation for the conservation of the name Streptomyces scabies. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2007) 57:2447-2448.
Truper HG (2008)
Truper, H.G.. "Against conservation of specific epithets formed wrongly as nominative nouns in apposition." Int. J. Syst. Evol. Microbiol. (2008) 58:1508-1510.
Trüper HG & De'clari L (1997) (reference relating to orthographic revision)
Trüper, H.G., and De'clari, L. "Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) 'in apposition'." Int. J. Syst. Bacteriol. (1997) 47(3):908-909. [No PubMed record available.]
Waksman SA & Henrici AT (1948b)
Waksman, S.A., and Henrici, A.T. "Family III. Streptomycetaceae Waksman and Henrici." IN: Breed, Murray, and Hitchens (Eds.), Bergey's Manual of Determinative Bacteriology, 6th Ed. (1948). The Williams and Wilkins Co., Balitmore. pp. 929-980. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Streptomyces scabiei meta-databases BacDive
Streptomyces scabiei 96-08 organism-specific BioCyc
Streptomyces scabiei corrig. (ex Thaxter 1891) Lambert and Loria, 1989 taxonomy/phylogenetic Encyclopedia of life
12 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Streptomyces scabiei culture/stock collections Global Catalogue of Microorganisms
2 records from this provider taxonomy/phylogenetic Index Fungorum
16 records from this provider organism-specific Integrated Microbial Genomes
3 records from provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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