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Taxonomy browser (Mycobacterium tuberculosis)

Mycobacterium tuberculosis

Taxonomy ID: 1773 (for references in articles please use NCBI:txid1773)
Scientific name: Mycobacterium tuberculosis (Zopf 1883) Lehmann and Neumann 1896 (Approved Lists 1980) emend. Riojas et al. 2018, nom. approb. 1)
type strain of Mycobacterium tuberculosis: ATCC:27294
type strain of Mycobacterium tuberculosis: personal::H37Rv
type strain of Mycobacterium tuberculosis: NCTC:7416
type strain of Mycobacterium tuberculosis: ATCC:25618
type strain of Mycobacterium tuberculosis: ATCC:9360
type strain of Mycobacterium tuberculosis: CCUG:37357
type strain of Mycobacterium tuberculosis: CCUG:38148
type strain of Mycobacterium tuberculosis: CIP:104475
type strain of Mycobacterium tuberculosis: CIP:64.31
type strain of Mycobacterium tuberculosis: CNCTC:7301
type strain of Mycobacterium tuberculosis: NCTC:13144
homotypic synonym: "Bacterium tuberculosis" Zopf 1883, effective name 2)
homotypic synonym: "Bacillus tuberculosis" (Zopf 1883) Klein 1884, effective name 2)
homotypic genbank synonym: Mycobacterium tuberculosis variant tuberculosis
Inherited blast name: high GC Gram+
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Mycobacterium tuberculosis typus humanus" Lehmann and Neumann 1907
synonym: "Mycobacterium tuberculosis var. hominis" Bergey et al. 1934, effective name 2)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,390,227 1,166,761
Protein 18,749,020 11,630,186
Structure 2,419 1,177
Genome 6 1
Popset 314 307
Conserved Domains 2 2
GEO Datasets 5,373 2,445
PubMed Central 49,627 46,671
Gene 127,436 1
SRA Experiments 60,699 49,425
GEO Profiles 22,220 16,198
Protein Clusters 2,880 2,880
Identical Protein Groups 601,052 546,470
Bio Project 3,219 699
Bio Sample 64,171 54,020
Bio Systems 5,659 583
Assembly 6,579 4,633
Probe 543 460
PubChem BioAssay 7,178 3,777
Taxonomy 2,915 1

Notes:

Comments and References:

Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]

Reference to PubMed documentRiojas MA et al. (2018)
Riojas, M.A., McGough, K.J., Rider-Riojas, C.J., Rastogi, N., and Hazbon, M.H. "Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum, Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis." Int. J. Syst. Evol. Microbiol. (2018) 68:324-332.

Runyon EH et al. (1967)
Runyon, E.H., et al. "Mycobacterium tuberculosis, M. bovis and M. microti species descriptions." Zentralbl. Bakteriol., I Abt., Orig. (1967) 204:405-413. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Zopf W (1883)
Zopf, W.: Die Spaltpilze. Edward Trewendt, Breslau, 1883, pp. 1-100. [No PubMed record available.]


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
OTHER PCR PRIMERWALK TRANSPOSON WGS ALL
BI - Broad Insititute
20,530 1,674 10,123 82,784 1,596,218 1,711,329
Totals per type
20,530 1,674 10,123 82,784 1,596,218 1,711,329

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
12 records from this provider organism-specific BioCyc
107 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Mycobacterium tuberculosis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
514 records from this provider organism-specific Integrated Microbial Genomes
Mycobacterium tuberculosis taxonomy/phylogenetic Lifemap
TubercuList taxonomy/phylogenetic NCBI taxonomy bookmarks
Mycobacterium tuberculosis (taxon passport) culture/stock collections StrainInfo
Bacillus tuberculosis taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Sanger companies/research institutes The Sanger Centre
Mycobacterium tuberculosis taxonomy/phylogenetic TreeBase
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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