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Taxonomy browser (Lactiplantibacillus plantarum)

Lactiplantibacillus plantarum

Taxonomy ID: 1590 (for references in articles please use NCBI:txid1590)
current name
Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020 in [Zheng J et al. (2020)]
homotypic synonym:
"Lactobacterium plantarum" (Orla-Jensen 1919) Krasil'nikov 1949, effective name 1)
Lactobacillus plantarum (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980), nom. approb. 2) in [Skerman VBD et al. (1980)]
type strain of Lactobacillus plantarum: ATCC:14917, CCUG:30503, CIP:103151, DSM:20174, IFO:15891, JCM:1149, BCCM/LMG:6907, NBRC:15891, NCIMB:11974, NRRL:B-4496, CGMCC:1.2437, NCTC:13644, CECT:748, BCCM/LMG:6907
basionym:
"Streptobacterium plantarum" Orla-Jensen 1919, effective name 1)
homotypic synonym:
"Lactobacillus plantari" (sic) (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980), effective name, orth. var. 1),3)
includes:
Lactobacillus sp. DMR09
Lactobacillus sp. Lact08
Lactobacillus sp. Lact09
Lactobacillus sp. Lact14
Lactobacillus sp. M6DWS
Lactobacillus sp. S2
Lactobacillus sp. S8
Lactobacillus sp. Z12
Weissella sp. Lact07
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Lactobacillus arabinosus" Fred et al., effective name 1)
heterotypic synonym
Lactobacillus arizonensis Swezey et al. 2000
type strain of Lactobacillus arizonensis: NRRL:B-14768, ATCC:BAA-171, CCUG:45396, CIP:106786, DSM:13273, JCM:11125
includes:
Lactobacillus sp. XJ25
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 130,336 125,490 399
Protein 1,536,593 1,418,058 -
Structure 125 77 -
Genome 1 1 -
Popset 569 568 -
GEO Datasets 664 530 -
PubMed Central 10,713 10,712 -
Gene 23,550 4,184 -
SRA Experiments 1,052 949 -
Protein Clusters 3,057 3,057 -
Identical Protein Groups 256,910 249,769 -
BioProject 650 568 -
BioSample 2,040 1,929 37
Assembly 885 822 6
PubChem BioAssay 16 16 -
Taxonomy 26 1 -

Notes:

Comments and References:

Zheng J et al. (2020), PubMed: abstract
Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Bringel F et al. (1996)
Bringel, F., Curk, M.C., and Hubert, J.C. "Characterization of lactobacilli by Southern-type hybridization with a Lactobacillus plantarum pyrDFE probe." Int. J. Syst. Bacteriol. (1996) 46:588-594.
Bergey DH et al. (1923)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]
Falsen E et al. (1999) (reference with type strain information)
Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.
Orla-Jensen S (1919)
Orla-Jensen, S.: The lactic acid bacteria. Host & Son, Copenhagen (1919). pp. 1-118. [No PubMed record available.]
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
Swezey JL et al. (2000)
Swezey, J.L., Nakamura, L.K., Abbott, T.P., and Peterson, R.E. "Lactobacillus arizonensis sp. nov., isolated from jojoba meal." Int. J. Syst. Evol. Microbiol. (2000) 50(5):1803-1809.
Kostinek M et al. (2005)
Kostinek, M., Pukall, R., Rooney, A.P., Schillinger, U., Hertel, C., Holzapfel, W.H., and Franz, C.M.A.P. "Lactobacillus arizonensis is a later heterotypic synonym of Lactobacillus plantarum." Int. J. Syst. Evol. Microbiol. (2005) 55(6):2485-2489. Published online 29 July 2005. doi:10.1099/ijs.0.63880-0

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactiplantibacillus plantarum meta-databases BacDive
32 records from this provider organism-specific BioCyc
103 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus plantarum culture/stock collections Global Catalogue of Microorganisms
274 records from this provider organism-specific Integrated Microbial Genomes
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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