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Taxonomy browser (Acetivibrio thermocellus)

Acetivibrio thermocellus

Taxonomy ID: 1515 (for references in articles please use NCBI:txid1515)
current name
Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019 in [Tindall BJ (2019b)]
basionym:
Clostridium thermocellum Viljoen et al. 1926 (Approved Lists 1980)
type strain of Clostridium thermocellum: ATCC:27405, DSM:1237, JCM:9322, BCCM/LMG:10435, NBRC:103400, NRRL:B-4536, NCIMB:10682
homotypic synonym:
"Ruminiclostridium thermocellum" (Viljoen et al. 1926) Yutin and Galperin 2013, effective name 1)
Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Acetivibrio
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,601 982 25
Protein 37,461 15,335 -
Structure 263 152 -
Genome 1 1 -
Popset 2 2 -
GEO Datasets 484 56 -
PubMed Central 2,348 2,348 -
Gene 13,168 15 -
SRA Experiments 1,174 921 -
Protein Clusters 2,528 2,528 -
Identical Protein Groups 9,145 7,968 -
BioProject 884 728 -
BioSample 1,074 842 91
Assembly 16 6 -
PubChem BioAssay 3 3 -
Taxonomy 9 1 -

Notes:

Comments and References:
Tindall BJ (2019b), PubMed: abstract
Tindall, B.J. "The names Hungateiclostridium Zhang et al. 2018, Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018, Hungateiclostridium cellulolyticum (Patel et al. 1980) Zhang et al. 2018, Hungateiclostridium aldrichii (Yang et al. 1990) Zhang et al. 2018, Hungateiclostridium alkalicellulosi (Zhilina et al. 2006) Zhang et al. 2018, Hungateiclostridium clariflavum (Shiratori et al. 2009) Zhang et al. 2018, Hungateiclostridium straminisolvens (Kato et al. 2004) Zhang et al. 2018 and Hungateiclostridium saccincola (Koeck et al. 2016) Zhang et al. 2018 contravene Rule 51b of the International Code of Nomenclature of Prokaryotes and require replacement names in the genus Acetivibrio Patel et al. 1980." Int. J. Syst. Evol. Microbiol. (2019) 69(12):3927-3932.
Skerman VBD et al. (1980) (Clostridium thermocellum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Viljoen JA et al. (1926)
Viljoen, J.A., Fred, E.B., and Peterson, W.H. "The fermentation of cellulose by thermophilic bacteria." Journal of Agricultural Science Cambridge (1926) 16:1-17. [No PubMed Record available.]
Yutin N & Galperin MY (2013)
Yutin, N., and Galperin, M.Y. "A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia." Environ. Microbiol. (2013) 15:2631-2641.
Zhang X et al. (2018)
Zhang, X., Tu, B., Dai, L.-r., Lawson, P.A., Zheng, Z.-z., Liu, L.-Y., Deng, Y., Zhang, H., and Cheng, L. "Petroclostridium xylanilyticum gen. nov., sp. nov., a xylan-degrading bacterium isolated from an oilfield, and reclassification of clostridial cluster III members into four novel genera in a new Hungateiclostridiaceae fam. nov." Int. J. Syst. Evol. Microbiol. (2018) 68:3197-3211.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Acetivibrio thermocellus meta-databases BacDive
Clostridium thermocellum Viljoen et al. 1926 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: 462 Organisms organism-specific Genomes On Line Database
Clostridium thermocellum culture/stock collections Global Catalogue of Microorganisms
4 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Acetivibrio thermocellus | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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