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Taxonomy browser (Clostridioides difficile)

Clostridioides difficile

Taxonomy ID: 1496 (for references in articles please use NCBI:txid1496)
current name
Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016
type strain of Clostridioides difficile: CGMCC:1.2184, ATCC:9689, BCRC:10642, CCUG:4938, CIP:104282, DSM:1296, JCM:1296, BCCM/LMG:15861, NCIMB:10666, NCTC:11209
homotypic synonym:
"Bacillus difficilis" Hall and O'Toole 1935, effective name 1)
"Peptoclostridium difficile" Yutin and Galperin 2013, effective name 1)
Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980), nom. approb. 2)
includes:
Clostridium sp. HMSC19D05
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Peptostreptococcaceae; Clostridioides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,275,431 1,185,497 251
Protein 7,290,157 6,411,134 -
Structure 266 131 -
Genome 1 1 -
Popset 136 136 -
Conserved Domains 5 3 -
GEO Datasets 859 604 -
PubMed Central 29,246 29,246 -
Gene 27,153 11,617 -
SRA Experiments 26,446 25,802 -
Protein Clusters 3,929 3,929 -
Identical Protein Groups 701,808 664,167 -
BioProject 836 526 -
BioSample 31,905 31,144 12
Assembly 14,260 13,822 3
Genetic Testing Registry 2 2 -
PubChem BioAssay 874 842 -
Taxonomy 296 1 -

Notes:

Comments and References:

Hall IC & O'Toole E (1935)
Hall, I.C., and O'Toole, E. "Intestinal flora in newborn infants with a description of a new pathogenic anaerobe, Bacillus difficilis." Am. J. Dis. Child. (1935) 49:390-402. [No PubMed record available.]
Lawson PA et al. (2016)
Lawson, P.A., Citron, D.M., Tyrrell, K.L., and Finegold, S.M. "Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O'Toole 1935) Prevot 1938." Anaerobe (2016) 40:95-99.
Prevot AR (1938b)
Prevot, A.R. "Etudes de systematique bacterienne. IV. Critique de la conception actuelle du genre Clostridium." Ann. Inst. Pasteur (Paris) (1938) 61:72-91. [No PubMed record available.]
Skerman VBD et al. (1980) (Clostridium difficile)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
VALIDATION LIST No. 171 (2016), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001585
Validation List No. 171: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2016) 66:3761-3764.
Yutin N & Galperin MY (2013)
Yutin, N., and Galperin, M.Y. "A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia." Environ. Microbiol. (2013) 15:2631-2641.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridioides difficile meta-databases BacDive
5 records from this provider organism-specific BioCyc
Clostridium difficile (Hall and O'Toole 1935) PrA%A9vot 1938 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
30 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Clostridium difficile culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
160 records from this provider organism-specific Integrated Microbial Genomes
Clostridioides difficile taxonomy/phylogenetic Lifemap
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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