Taxonomy browser (Clostridium botulinum)

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Taxonomy browser (Clostridium botulinum)

Clostridium botulinum

Taxonomy ID: 1491 (for references in articles please use NCBI:txid1491)

current name

Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980) (van Ermengem 1896) Bergey et al. 1923

type strain of Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980): ATCC :25763, CIP:104310, CDC:KA:38, personal::ELTDK 103, VPI:1550, VTT:E:98821

basionym:

"Bacillus botulinus" van Ermengem 1896, effective name¹⁾

homotypic synonym:

"Botulobacillus botulinus" (van Ermengem 1896) Orla-Jensen 1909, effective name²⁾

"Ermengemillus botulinus" (van Ermengem 1896) Heller 1922, effective name³⁾

NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Pacinia putrifica

homotypic synonym:

"Pacinia putrifica" Trevisan 1889, effective name⁴⁾

heterotypic synonym

Clostridium putrificum (Trevisan 1889) Reddish and Rettger 1922 (Approved Lists 1980), nom. approb.⁵⁾

type strain of Clostridium putrificum: ATCC :25784, BCRC :14514, CCUG :15942, CIP:60.54, DSM :1734, JCM :1410, NCIMB:10677, NCTC :13037, VPI:4440

basionym:

"Bacillus putrificus" (Trevisan 1889) Bienstock 1899, effective name⁶⁾

Lineage( full ): cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	78,094	58,505	144
Protein	788,578	603,642	-
Structure	290	247	-
Conserved Domains	1	1	-
GEO Datasets	403	388	-
PubMed Central	6,649	6,649	-
Gene	61,843	8,492	-
SRA Experiments	1,453	1,246	-
Protein Clusters	7,947	7,947	-
Identical Protein Groups	402,809	383,795	-
BioProject	204	135	-
BioSample	2,360	1,991	7
Datasets Genome	1,513	1,183	-
PubChem BioAssay	304	260	-
Taxonomy	279	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

image:Clostridium botulinum

Image from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.

Bergey DH et al. (1923)

Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]

Collins MD & East AK (2004)

Collins, M.D., and East, A.K. "Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins." J. Appl. Microbiol. (1998) 84:5-17.

Judicial Commission (1997)

Judicial Commission of the International Committee on Systematic Bacteriology. "VIIIth International Congress of Microbiology and Applied Bacteriology. Minutes of the meetings, 17 and 22August 1996, Jerusalem, Israel." Int. J. Syst. Bacteriol. (1997) 47:240-241. [No PubMed record available.]

JUDICIAL OPINION 69 (1999)

Judicial Commission of the International Committee on Systematic Bacteriology. "Rejection of Clostridium putrificum and conservation of Clostridium botulinum and Clostridium sporogenes-Opinion 69." Int. J. Syst. Bacteriol. (1999) 49:339.

Olsen I et al. (1995)

Olsen, I., Johnson, J.L., Moore, L.V.H., and Moore, W.E.C. "Rejection of Clostridium putrificum and conservation of Clostridium botulinum and Clostridium sporogenes. Request for an opinion." Int. J. Syst. Bacteriol. (1995) 45:414. [No PubMed record available.]

Orla-Jensen S (1909)

Orla-Jensen, S. "Die Hauptlinien des naturlichen Bakterien-systems." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. II (1909) 22:97-98,305-346. [No PubMed record available.]

Skerman VBD et al. (1980) (Clostridium botulinum)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Skerman VBD et al. (1980) (Clostridium putrificum)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Trevisan V (1889)

Trevisan, V. I generie e le specie della Batteriacee. (1889) Zanaboni and Gabuzzi, Milan, pp. 1-35. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Clostridium botulinum	meta-databases	BacDive - Free access to bacterial information database
Clostridium botulinum (van Ermengem 1896) Bergey et al. 1923 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 202 Organisms	organism-specific	Genomes On Line Database
Clostridium botulinum	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
149 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Clostridium botulinum \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Pacinia putrifica	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov