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Taxonomy browser (Bacillus amyloliquefaciens)

Bacillus amyloliquefaciens

Taxonomy ID: 1390 (for references in articles please use NCBI:txid1390)
current name
Bacillus amyloliquefaciens (ex Fukumoto 1943) Priest et al. 1987 emend. Wang et al. 2008
type strain of Bacillus amyloliquefaciens: ATCC:23350, BCRC:11601, CCUG:28519, CFBP:4246, CIP:103265, DSM:7, HAMBI:1824, IFO:15535, BCCM/LMG:12234, BCCM/LMG:9814, NBRC:15535, NCAIM B.01704, NCIMB:12077, NRRL:B-14393, personal::Fukumoto strain F
includes:
Bacillus sp. M16(2010)
Bacillus sp. M7(2010)
Bacillus sp. BHR1P1B2
Bacillus sp. BHR3P1B2
Bacillus sp. BTSS3
Bacillus sp. CCF7
Bacillus sp. EnB-bsys5
Bacillus sp. HU1
Bacillus sp. PUE-MAN5
Bacillus amyloliquefaciens subsp. amyloliquefaciens (Priest et al. 1987) Borriss et al. 2011
Bacillus sp. 39(2011)
Bacillus sp. 51(2011)
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Bacillus amyloliquifaciens
homotypic synonym:
"Bacillus amyloliquifaciens" (sic) Fukumoto 1943, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 12,521 11,997 41
Protein 386,605 327,155 -
Structure 149 149 -
Genome 1 1 -
Popset 686 686 -
GEO Datasets 39 39 -
PubMed Central 2,316 2,316 -
Gene 37,756 3,985 -
SRA Experiments 120 116 -
Protein Clusters 1,890 1,890 -
Identical Protein Groups 117,623 109,982 -
Bio Project 148 127 -
Bio Sample 228 201 4
Bio Systems 1,958 - -
Assembly 111 92 1
Probe 17 17 -
PubChem BioAssay 15 15 -
Taxonomy 27 1 -

Notes:

Comments and References:

Borriss R et al. (2011)
Borriss, R., Chen, X.-H., Rueckert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., Junge, H., Vater, J., Puhler, A., and Klenk, H.-P. "Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons." Int. J. Syst. Evol. Microbiol. (2011) 61:1786-1801.
Dunlap CA et al. (2015)
Dunlap, C.A., Kim, S.J., Kwon, S.W., and Rooney, A.P. "Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus." Int. J. Syst. Evol. Microbiol. (2015) 65:2104-2109.
Dunlap CA et al. (2016)
Dunlap, C.A., Kim, S.-J., Kwon, S.-W., and Rooney, A.P. "Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics." Int. J. Syst. Evol. Microbiol. (2016) 66:1212-1217.
Fan B et al. (2017)
Fan, B., Blom, J., Klenk, H.-P., and Borriss, R. "Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis form an 'Operational Group B. amyloliquefaciens' within the B. subtilis species complex." Front. Microbiol. (2017) 8:22.
Fukumoto J (1943)
Fukumoto, J. "Studies on the production of bacterial amylase. I. Isolation of bacteria secreting potent amylases and their distribution." J. Agric. Chem. Soc. Jpn. (1943) 19:487-503. [No PubMed record available.]
Heyndrickx M et al. (1997)
Heyndrickx, M., Lebbe, L., Vancanneyt, M., Kersters, K., De Vos, P., Logan, N.A., Forsyth, G., Nazli, S., Ali, N., and Berkeley, R.C.W. "A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig., and A. migulanus, and A. thermoaerophilus." Int. J. Syst. Bacteriol. (1997) 47:808-817. [No PubMed record available.]
Priest FG et al. (1987)
Priest, F.G., Goodfellow, M., Shute, L.A., and Berkeley, R.C.W. "Bacillus amyloliquefaciens sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1987) 37:69-71. [No PubMed record available.]
Ruiz-Garcia C et al. (2005)
Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., Llamas, I,. and Quesada, E. "Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain." Int. J. Syst. Evol. Microbiol. (2005) 55:191-195. Published online 30 July 2004. doi:10.1099/ijs.0.63310-0. [N.B.: the type strain is listed as CECT 5686 in the abstract, but as CECT 5687 in the body of the text. CECT 5686 is apparently correct, according to the annotation at the CECT.]
Wang LT et al. (2008)
Wang, L.-T., Lee, F.-L., Tai, C.-J., and Kuo, H.-P. "Bacillus velezensis is a later heterotypic synonym of Bacillus amyloliquefaciens." Int. J. Syst. Evol. Microbiol. (2008) 58:671-675.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacillus amyloliquefaciens meta-databases BacDive
8 records from this provider organism-specific BioCyc
Bacillus amyloliquefaciens (ex Fukumoto 1943) Priest et al., 1987 taxonomy/phylogenetic Encyclopedia of life
32 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacillus amyloliquefaciens culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
40 records from this provider organism-specific Integrated Microbial Genomes
Bacillus amyloliquefaciens taxonomy/phylogenetic Lifemap
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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