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Taxonomy browser (Ruminococcus flavefaciens)

Ruminococcus flavefaciens

Taxonomy ID: 1265 (for references in articles please use NCBI:txid1265)
current name
Ruminococcus flavefaciens Sijpesteijn 1948
type strain of Ruminococcus flavefaciens: ATCC:19208
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 11,690 9,763 73
Protein 68,167 64,897 -
Structure 25 13 -
Genome 1 1 -
Popset 13 13 -
Conserved Domains 2 2 -
GEO Datasets 13 4 -
PubMed Central 724 724 -
Gene 5,474 2,263 -
SRA Experiments 27 16 -
Protein Clusters 2,083 2,083 -
Identical Protein Groups 46,724 46,339 -
Bio Project 28 17 -
Bio Sample 91 80 1
Assembly 71 63 1
Probe 26 26 -
PubChem BioAssay 4 4 -
Taxonomy 9 1 -

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Willems A & Collins MD (1995e)
Willems, A., and Collins, M.D. "Phylogenetic analysis of Ruminococcus flavefaciens, the type species of the genus Ruminococcus, does not support the reclassification of Streptococcus hansenii and Peptostreptococcus productus as ruminococci." Int. J. Syst. Bacteriol. (1995) 45:572-575.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Ruminococcus flavefaciens Sijpesteijn 1948 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
6 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Ruminococcus flavefaciens culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
6 records from provider organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]

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