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Taxonomy browser (Rattus rattus)

Rattus rattus

Taxonomy ID: 10117 (for references in articles please use NCBI:txid10117)
current name
Rattus rattus (Linnaeus, 1758)
Mus rattus Linnaeus, 1758
Genbank common name: black rat
NCBI BLAST name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
heterotypic synonym
Rattus rattoides (Pictet & Pictet, 1844)
heterotypic synonym
Rattus wroughtoni Hinton, 1919
common name(s) house rat, roof rat
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 46,392 45,744
Protein 38,610 38,041
Structure 61 61
Genome 1 1
Popset 155 152
GEO Datasets 344 344
PubMed Central 2,320 2,320
Gene 32,125 32,125
SRA Experiments 1,559 1,559
GEO Profiles 31,099 31,099
Protein Clusters 13 13
Identical Protein Groups 32,739 32,618
BioProject 57 57
BioSample 2,652 2,652
Assembly 2 2
PubChem BioAssay 2 2
Taxonomy 12 1

Comments and References:

image:Rattus rattus
The laboratory rat (Rattus norvegicus) is occassionally misidentified as Rattus rattus in sequence submissions. Many of the sequence entries listed here are likely to have come from Rattus norvegicus.

Genome Information

Go to NCBI genomic BLAST page for Rattus rattus

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rattus rattus taxonomy/phylogenetic Animal Diversity Web
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Rattus rattus taxonomy/phylogenetic Barcodes of Life
3 records from this provider supplemental materials Dryad Digital Repository
Rattus rattus (Linnaeus, 1758) taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Rattus rattus (Linnaeus, 1758) taxonomy/phylogenetic Integrated Taxonomic Information System
Rattus rattus taxonomy/phylogenetic Lifemap
Rattus rattus Linnaeus 1758 taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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