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Taxonomy browser (Mus musculus)

Mus musculus

Taxonomy ID: 10090 (for references in articles please use NCBI:txid10090)
current name
Mus musculus Linnaeus, 1758
includes:
LK3 transgenic mice
Mus sp. 129SV
nude mice
transgenic mice
Genbank common name: house mouse
NCBI BLAST name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name(s) mouse
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 11,059,627 10,449,722
Protein 344,324 336,533
Structure 7,291 7,287
Genome 1 1
Popset 8,611 8,367
Conserved Domains 23 23
GEO Datasets 1,326,883 1,326,075
PubMed Central 30,228 29,858
Gene 212,422 212,327
HomoloGene 19,032 19,032
SRA Experiments 1,328,758 1,318,562
GEO Profiles 50,177,624 50,177,624
Protein Clusters 13 13
Identical Protein Groups 202,883 200,306
Bio Project 48,307 48,104
Bio Sample 1,348,595 1,338,530
Bio Systems 2,369 2,369
Assembly 39 36
Probe 865,888 865,878
PubChem BioAssay 172,829 172,821
Taxonomy 17 1

Comments and References:

Note: Some journals identify organisms only with vernacular names like "mouse" or "rats". Currently, an organism idenitified as "mouse" will be found under the name "Mus sp." although we are aware that most of the corresponding sequence records are likely to be from "Mus musculus". If it is important to see all records for "Mus musculus", you should therefore consider retrieving the records for "Mus sp." as well.

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Mus musculus

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mus musculus taxonomy/phylogenetic Animal Diversity Web
2 records from this provider taxonomy/phylogenetic AnimalBase
Mus musculus taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Mus musculus taxonomy/phylogenetic Barcodes of Life
Mus musculus organism-specific BioCyc
DigiMorph images Digital Morphology
102 records from this provider supplemental materials Dryad Digital Repository
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Encyclopedia of life
22 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639370800: Mus musculus C57BL/6J organism-specific Integrated Microbial Genomes
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Integrated Taxonomic Information System
Mus musculus taxonomy/phylogenetic Lifemap
Mus musculus Linnaeus 1758 taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
2 records from this provider taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic World Register of Marine Species
17 records from provider organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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