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Taxonomy browser (Mus musculus)

Mus musculus

Taxonomy ID: 10090 (for references in articles please use NCBI:txid10090)
current name
Mus musculus Linnaeus, 1758
includes:
Balb/c mouse
LK3 transgenic mice
Mus sp. 129SV
nude mice
transgenic mice
Genbank common name: house mouse
NCBI BLAST name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name(s) mouse
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 11,189,218 10,578,301
Protein 385,521 375,843
Structure 9,673 9,667
Conserved Domains 22 22
GEO Datasets 2,422,760 2,421,727
PubMed Central 42,643 42,236
Gene 251,850 251,755
HomoloGene 19,032 19,032
SRA Experiments 2,666,872 2,654,013
GEO Profiles 50,177,624 50,177,624
Protein Clusters 13 13
Identical Protein Groups 222,385 219,523
BioProject 90,476 90,090
BioSample 2,665,945 2,653,431
Datasets Genome 103 89
PubChem BioAssay 233,478 233,474
Taxonomy 18 1

Comments and References:

image:Mus musculus
Image by Ilmari Karonen from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.
Note: Some journals identify organisms only with vernacular names like "mouse" or "rats". Currently, an organism idenitified as "mouse" will be found under the name "Mus sp." although we are aware that most of the corresponding sequence records are likely to be from "Mus musculus". If it is important to see all records for "Mus musculus", you should therefore consider retrieving the records for "Mus sp." as well.

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Mus musculus

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mus musculus taxonomy/phylogenetic Animal Diversity Web
2 records from this provider taxonomy/phylogenetic AnimalBase
Mus musculus taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Mus musculus taxonomy/phylogenetic Barcodes of Life
DigiMorph images Digital Morphology
166 records from this provider supplemental materials Dryad Digital Repository - Access Curated Datasets
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Encyclopedia of life
GOLD: 31 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639370800: Mus musculus C57BL/6J organism-specific Integrated Microbial Genomes
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Integrated Taxonomic Information System
Mus musculus taxonomy/phylogenetic Lifemap
Mus musculus Linnaeus 1758 taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
2 records from this provider taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Ocean Biogeographic Information System
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic World Register of Marine Species
17 records from provider organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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