Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
   
Taxonomy browser (Flavobacterium johnsoniae)

Flavobacterium johnsoniae

Taxonomy ID: 986 (for references in articles please use NCBI:txid986)
Scientific name: Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Chen et al. 2013
type strain of Flavobacterium johnsoniae: ATCC:17061
type strain of Flavobacterium johnsoniae: CCUG:35202
type strain of Flavobacterium johnsoniae: CFBP:3036
type strain of Flavobacterium johnsoniae: CIP:100931
type strain of Flavobacterium johnsoniae: DSM:2064
type strain of Flavobacterium johnsoniae: IFO:14942
type strain of Flavobacterium johnsoniae: JCM:8514
type strain of Flavobacterium johnsoniae: BCCM/LMG:1341
type strain of Flavobacterium johnsoniae: NBRC:14942
homotypic synonym: Vegetative myxobacteria Johnson 1932
homotypic synonym: Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996 emend. Kim et al. 2012
includes: Flavobacterium sp. GSE09
includes: Flavobacterium sp. LB-D
NCBI BLAST® name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: "Cytophaga johnsonii" (sic) Stanier 1957, effective name 2)
heterotypic synonym: Cytophaga johnsonae Stanier 1947 (Approved Lists 1980), nom. approb. 1)
heterotypic synonym: Flexibacter aurantiacus Lewin 1969 (Approved Lists 1980), nom. approb. 1)
  type strain of Flexibacter aurantiacus: ATCC:23107
type strain of Flexibacter aurantiacus: DSM:6792
type strain of Flexibacter aurantiacus: BCCM/LMG:3987
type strain of Flexibacter aurantiacus: NCIMB:1382
type strain of Flexibacter aurantiacus: VKM:B:1426
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,467 1,249
Protein 66,240 55,786
Structure 13 4
Genome 1 1
Popset 35 34
PubMed Central 436 436
Gene 14,721 4,324
SRA Experiments 11 10
Protein Clusters 3,672 3,672
Identical Protein Groups 29,585 29,317
Bio Project 13 11
Bio Sample 15 13
Bio Systems 358 176
Assembly 10 8
Probe 3 3
PubChem BioAssay 1 1
Taxonomy 4 1

Notes:

Comments and References:

Nota BeneBernardet JF et al. (1996)
Bernardet, J.F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K., and Vandamme, P. "Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978)." Int. J. Syst. Bacteriol. (1996) 46:128-148. [No PubMed record available.]

Reference to PubMed documentChen WM et al. (2013d)
Chen, W.-M., Huang, W.-C., Young, C.-C., and Sheu, S.-Y. "Flavobacterium tilapiae sp. nov., isolated from a freshwater pond, and emended descriptions of Flavobacterium defluvii and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2013) 63:827-834.

Reference to PubMed documentKim JJ et al. (2012)
Kim, J.-J., Kanaya, E., Weon, H.-Y., Koga, Y., Takano, K., Dunfield, P.F., Kwon, S.-W., and Kanaya, S. "Flavobacterium compostarboris sp. nov., isolated from leaf-and-branch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae." Int. J. Syst. Evol. Microbiol. (2012) 62:2018-2024.

Reference to PubMed documentLewin RA (1969)
http://mic.sgmjournals.org/cgi/content/abstract/58/2/189
Lewin, R.A. "A classification of flexibacteria." (1969) J. Gen. Microbiol. 58:189-206. [No PubMed abstract available.]

Skerman VBD et al. (1980) (Cytophaga johnsonae)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [See 'Approved Lists of Bacterial Names' LinkOut below.]

Skerman VBD et al. (1980) (Flexibacter aurantiacus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [See 'Approved Lists of Bacterial Names' LinkOut below.]

Reference to PubMed documentStanier RY (1947)
Stanier, R.Y. "Studies on nonfruiting myxobacteria. I. Cytophaga johnsonae, n. sp., a chitin-decomposing myxobacterium." J. Bacteriol. (1947) 53:297-315. [No abstract available.]

Reference to PubMed documentStine CB et al. (2017)
Stine, C.B., Li, C., Crosby, T.C., Hasbrouck, N.R., Lam, C., and Tadesse, D.A. "Draft whole-genome sequences of 18 Flavobacterium spp." Genome Announc. (2017) 5:e00865-17.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider meta-databases BacDive
Flavobacterium johnsoniaeGSE09 organism-specific BioCyc
Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al., 1996 taxonomy/phylogenetic Encyclopedia of life
5 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Flavobacterium johnsoniae culture/stock collections Global Catalogue of Microorganisms
5 records from this provider organism-specific Integrated Microbial Genomes
Cytophaga johnsonae taxonomy/phylogenetic Integrated Taxonomic Information System
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]