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Taxonomy browser (Bacteroides fragilis)

Bacteroides fragilis

Taxonomy ID: 817 (for references in articles please use NCBI:txid817)
Scientific name: Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb. 1)
type strain of Bacteroides fragilis: ATCC:25285
type strain of Bacteroides fragilis: CCUG:4856
type strain of Bacteroides fragilis: CIP:77.16
type strain of Bacteroides fragilis: DSM:2151
type strain of Bacteroides fragilis: JCM:11019
type strain of Bacteroides fragilis: BCCM/LMG:10263
type strain of Bacteroides fragilis: NCTC:9343
homotypic synonym: "Fusiformis fragilis" Topley and Wilson 1929, effective name 2)
homotypic synonym: "Ristella fragilis" Prevot 1938, effective name 2)
homotypic synonym: "Pseudobacterium fragilis" Krasil'nikov 1949, effective name 2)
homotypic synonym: Bacillus fragilis Veillon and Zuber 1898
includes: Bacteroides sp. 2_1_16
includes: Bacteroides sp. 2_1_56FAA
NCBI BLAST® name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: "Bacteroides inaequalis" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym: "Bacteroides incommunis" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym: "Bacteroides uncatus" Eggerth and Gagnon 1933, effective name 2)
heterotypic synonym: "Ristella incommunis" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym: "Ristella uncata" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym: "Sphaerophorus inaequalis" (Eggerth and Gagnon 1933) Prevot 1938, effective name 2)
heterotypic synonym: "Pseudobacterium inaequalis" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym: "Pseudobacterium incommunis" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym: "Pseudobacterium uncatum" (Eggerth and Gagnon 1933) Krasil'nikov 1949, effective name 2)
heterotypic synonym: "Sphaerophorus intermedius" Bergan and Hovig 1968, effective name 2)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
   Entrez records   
Database name Subtree links Direct links
Nucleotide 64,480 29,423
Protein 812,598 396,910
Structure 119 22
Genome 1 1
Popset 38 38
Conserved Domains 6 2
GEO Datasets 128 50
PubMed Central 6,116 6,116
Gene 13,567 29
SRA Experiments 263 136
Protein Clusters 5,173 5,173
Identical Protein Groups 177,913 126,019
Bio Project 168 64
Bio Sample 437 327
Bio Systems 619 152
Assembly 181 83
Probe 19 19
PubChem BioAssay 235 232
Taxonomy 89 1

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]

Nota BeneCato EP & Johnson JL (1976)
Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]

Reference to PubMed documentEggerth AH & Gagnon BH (1933)
http://jb.asm.org/content/25/4/389.long
Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]

Reference to PubMed documentHahnke R et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., GarcIa-Lopez, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Goker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.

Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

Nota BeneList of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67:2081-2086.

Prevot AR (1938)
Prevot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Topley WWC & Wilson GS (1929)
Topley, W.W.C., and Wilson, G.S. The Principles of Bacteriology and Immunity, 1st ed. (1929) Edward Arnold and Co., London, pp. 1-587. [No PubMed record available.]

Veillon A & Zuber A (1898)
Veillon, A., and Zuber, A. "Recherches sur quelques microbes strictement anaerobies et leur role en pathologie." Archives de Medecine Experimentale et d'Anatomie Pathologique (1898) 10:517-545. [No PubMed record available.]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacteroides fragilis meta-databases BacDive
4 records from this provider organism-specific BioCyc
Bacteroides fragilis (Veillon and Zuber 1898) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
23 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides fragilis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
11 records from this provider organism-specific Integrated Microbial Genomes
Sanger companies/research institutes The Sanger Centre
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