Taxonomy browser (Vibrio parahaemolyticus)

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Taxonomy browser (Vibrio parahaemolyticus)

Vibrio parahaemolyticus

Taxonomy ID: 670 (for references in articles please use NCBI:txid670)

current name

Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980) emend. West et al. 1986, emended name¹⁾

type strain of Vibrio parahaemolyticus: ATCC :17802, CAIM:320, CCUG :4224, CCUG :14474, CCUG :15657, CIP:75.2, DSM :10027, IFO :12711, NBRC :12711, BCCM/LMG :2850, NCCB:77010, NCCB:77018, NCTC :10903, NRRL :B-4167, NCIMB:1902

homotypic synonym:

"Pasteurella parahaemolytica" Fujino et al. 1951, effective name²⁾

"Oceanomonas parahaemolytica" (Fujino et al. 1951) Miyamoto et al. 1961, effective name³⁾

Beneckea parahaemolytica (Fujino et al. 1951) Baumann et al. 1971 (Approved Lists 1980), nom. approb.⁴⁾

Vibrio parahaemolyticus Sakazaki et al. 1963 (sic)

includes:

Vibrio sp. Tumbes-M02

Vibrio sp. Tumbes-M03

Vibrio sp. Tumbes-M04

Vibrio sp. Tumbes-M05

Vibrio sp. Tumbes-M06

Vibrio sp. Tumbes-M07

Vibrio sp. Tumbes-M10

Vibrio sp. Tumbes-M11

Vibrio sp. Tumbes-M12

NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	830,856	589,107	610
Protein	6,648,005	6,291,232	-
Structure	111	56	-
Genome	1	1	-
Popset	307	307	-
Conserved Domains	4	3	-
GEO Datasets	342	263	-
PubMed Central	6,753	6,753	-
Gene	29,608	9,998	-
SRA Experiments	9,196	9,031	-
Protein Clusters	4,067	4,067	-
Identical Protein Groups	2,358,599	2,321,590	-
BioProject	766	668	-
BioSample	12,890	12,551	62
Assembly	11,058	10,706	7
Genetic Testing Registry	2	2	-
PubChem BioAssay	113	113	-
Taxonomy	258	1	-

Notes:

1) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

image:Vibrio parahaemolyticus

Baumann P et al. (1971)

Baumann, P., Baumann, L., and Mandel, M. "Taxonomy of marine bacteria: the genus Beneckea." J. Bacteriol. (1971) 107:268-294.

Baumann P et al. (1980)

Baumann, P., Baumann, L., Bang, S.S., and Woolkalis, M.J. "Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: abolition of the genus Beneckea." Curr. Microbiol. (1980) 4:127-132. [No PubMed record available.]

Fujino T et al. (1951)

Fujino, T., Okuno, Y., Nakada, D., Aoyama, A., Fukai, K., Mukai, T., and Ueho, T. "On the bacteriological examination of shirasu food poisoning. Journal of the Japanese Association of Infectious Diseases (1951) 25:11. (in Japanese) [No PubMed record available.]

Fujino T et al. (1974)

Fujino, T., Sakazaki, R., and Takamura, K. "Designation of the type strain of Vibrio parahaemolyticus and description of 200 strains of the species." Int. J. Syst. Bacteriol. (1974) 24:447-449. [No PubMed record available.]

Hill LR et al. (1984)

Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on SystematicBacteriology." Int. J. Syst. Bacteriol. (1984) 34(4):508-511. [No PubMed record available.]

Miyamoto Y et al. (1961)

Miyamoto, Y., Nakamura, K., and Takizawa, K. "Pathogenic halophiles. Proposals of a new genus 'Oceanomonas' and of the amended species names." Jpn. J. Microbiol. (1961) 5:477-481. [No PubMed record available.]

Sakakzaki R et al. (1963)

Sakazaki, R., Iwanami, S., and Fukumi, H. "Studies on the enteropathogenic facultatively halophilic bacteria Vibrio parahaemolyticus. I. Morphological, cultural and biochemical properties and its taxonomical position." Jpn. J. Med. Sci. Biol. (1963) 16:161-188. [No abstract available.]

Skerman VBD et al. (1980) (Beneckea parahaemolytica)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Skerman VBD et al. (1980) (Vibrio parahaemolyticus)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

West PA et al. (1986)

West, P.A., Brayton, P.R., Bryant, T.N., and Colwell, R.R. "Numerical taxonomy of vibrios isolated from aquatic environments." Int. J. Syst. Bacteriol. (1986) 36:531-543. [No PubMed record available.]

genome sequence

Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Vibrio parahaemolyticus	meta-databases	BacDive
20 records from this provider	organism-specific	BioCyc
Beneckea parahaemolytica (Fujino et al. 1951) Baumann et al. 1971 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
46 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
2 records from this provider	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
271 records from this provider	organism-specific	Integrated Microbial Genomes
Vibrio parahaemolyticus	taxonomy/phylogenetic	Integrated Taxonomic Information System
Vibrio parahaemolyticus	taxonomy/phylogenetic	Lifemap
2 records from this provider	taxonomy/phylogenetic	Ocean Biogeographic Information System
2 records from this provider	taxonomy/phylogenetic	World Register of Marine Species
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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