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Taxonomy browser (Setaria italica)

Setaria italica

Taxonomy ID: 4555 (for references in articles please use NCBI:txid4555)
Scientific name: Setaria italica (L.) P.Beauv.
homotypic synonym: Chaetochloa italica (L.) Scribn.
homotypic synonym: Panicum italicum L.
homotypic synonym: Setaria viridis subsp. italica (L.) Briq.
Genbank common name: foxtail millet
NCBI BLAST® name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
   Entrez records   
Database name Direct links
Nucleotide 209,190
Protein 79,752
Genome 1
Popset 94
GEO Datasets 20
PubMed Central 1,046
Gene 39,804
SRA Experiments 2,831
Identical Protein Groups 52,076
Bio Project 211
Bio Sample 2,877
Bio Systems 259
Assembly 3
Probe 28,288
PubChem BioAssay 5
Taxonomy 1

Comments and References:

Nota BeneSoreng RJ et al. 2003 & on
Soreng RJ, G Davidse, PM Peterson, FO Zuloaga, EJ Judziewicz, TS Filgueiras & O Morrone 2003 and onwards. On-line taxonomic novelties and updates, distributional additions and corrections, and editorial changes since the four published volumes of the Catalogue of New World Grasses (Poaceae) published in Contributions from the United States National Herbarium Vols. 39, 41, 46, and 48. Internet Catalogue of New World Grasses http://www.tropicos.org/Project/CNWG

Nota BeneAliscioni SS et al. 2003
Aliscioni SS, Giussani LM, Zuloaga FO, and Kellogg EA. 2003. A molecular phylogeny of Panicum (Poaceae: Paniceae): tests of monophyly and phylogenetic placement within the Panicoideae. American Journal of Botany 90: 796-821. doi: http://dx.doi.org/10.3732/ajb.90.5.796


Genome Information

Go to NCBI genomic BLAST® page for Setaria italica
Genome view: 10 chromosomes
Names I II III IV V VI VII VIII IX Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND WGS ALL
HAGSC - Hudson Alpha Genome Sequencing Center
96,417 - 96,417
JGI - Joint Genome Institute, U.S. Department of Energy
- 3,251,266 3,251,266
Totals per type
96,417 3,251,266 3,347,683

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Setaria italica taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
Setaria italica (L.) Beauv. taxonomy/phylogenetic Encyclopedia of life
14 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2614208509: Setaria italica Yugu1 organism-specific Integrated Microbial Genomes
Setaria italica (L.) Beauv. taxonomy/phylogenetic Integrated Taxonomic Information System
Setaria italica taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Setaria italica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Setaria italica taxonomy/phylogenetic The International Plant Names Index
Setaria italica (L.) P. Beauv. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
6 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Setaria italica taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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