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Taxonomy browser (Xanthomonas perforans)

Xanthomonas perforans

Taxonomy ID: 442694 (for references in articles please use NCBI:txid442694)
Scientific name: Xanthomonas perforans Jones et al. 2006
type strain of Xanthomonas perforans: personal::XV938
type strain of Xanthomonas perforans: ATCC:BAA:983
type strain of Xanthomonas perforans: DSM:18975
type strain of Xanthomonas perforans: ICMP:16690
type strain of Xanthomonas perforans: NCPPB:4321
NCBI BLAST® name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic genbank synonym: Xanthomonas euvesicatoria pv. perforans (Jones et al. 2006) Constantin et al. 2016
heterotypic synonym: Xanthomonas axonopodis pv. vesicatoria
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas
   Entrez records   
Database name Subtree links Direct links
Nucleotide 26,793 26,789
Protein 286,563 282,475
Genome 1 1
Popset 90 90
PubMed Central 68 68
SRA Experiments 33 33
Protein Clusters 876 876
Identical Protein Groups 22,847 22,812
Bio Project 42 41
Bio Sample 147 146
Assembly 74 72
Taxonomy 2 1

Comments and References:

Nota BeneConstantin EC et al. (2016)
Constantin, E.C., Cleenwerck, I., Maes, M., Baeyen, S., Van Malderghem, C., De Vos, P., and Cottyn, B. "Genetic characterization of strains named as Xanthomonas axonopodis pv. dieffenbachiae leads to a taxonomic revision of the X. axonopodis species complex." Plant Pathol. (2016) 65:792-806. [No PubMed record available.]

Nota BeneJones JB et al. (1998)
Jones, J.B., Stall, R.E., and Bouzar, H. "Diversity among xanthomonads pathogenic on pepper and tomato." Ann. Rev. Phytopathol. (1998) 36:41-58. [No PubMed record available.]

Reference to PubMed documentJones JB et al. (2000)
Jones, J.B., Bouzar, H., Stall, R.E., Almira, E.C., Roberts, P.D., Bowen, B.W., Sudberry, J., Strickler, P.M., and Chun, J. "Systematic analysis of xanthomonads (Xanthomonas spp.) associated with pepper and tomato lesions." Int. J. Syst. Evol. Microbiol. (2000) 50:1211-1219.

Reference to PubMed documentJones JB et al. (2004)
Jones, J.B., Lacy, G.H., Bouzar, H., Stall, R.E., and Schaad, N.W. "Reclassification of the xanthomonads associated with bacterial spot disease of tomato and pepper." Syst. Appl. Microbiol. (2004) 27:755-762. [Erratum: Syst. Appl. Microbiol. (2006) 29:85-86.]

Reference to PubMed documentVALIDATION LIST No. 109 (2006)
Validation List No. 109. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2006) 56:925-927.

Reference to PubMed documentYoung JM et al. (2008)
Young, J.M., Park, D.C., Shearman, H.M., and Fargier, E. "A multilocus sequence analysis of the genus Xanthomonas." Syst. Appl. Microbiol. (2008) 31:366-377.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Xanthomonas perforans meta-databases BacDive
Xanthomonas perforans LH3 organism-specific BioCyc
Xanthomonas perforans Jones et al. 2006 taxonomy/phylogenetic Encyclopedia of life
34 records from this provider organism-specific Genomes On Line Database
Xanthomonas perforans culture/stock collections Global Catalogue of Microorganisms
35 records from provider organism-specific Integrated Microbial Genomes
Notes:
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