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Taxonomy browser ([Eubacterium] rectale)

[Eubacterium] rectale 1)

Taxonomy ID: 39491 (for references in articles please use NCBI:txid39491)
Scientific name: Eubacterium rectale (Hauduroy et al. 1937) Prevot 1938
type strain of Eubacterium rectale: ATCC:33656
type strain of Eubacterium rectale: not VPI 0989
type strain of Eubacterium rectale: VPI:0990
type strain of Eubacterium rectale: not ATCC 25578
type strain of Eubacterium rectale: CIP:105953
neotype strain of Eubacterium rectale: personal::A1-86
neotype strain of Eubacterium rectale: DSM:17629
neotype strain of Eubacterium rectale: NCIMB:14373
homotypic synonym: "Bacteroides rectalis" Hauduroy et al. 1937, effective name 2)
homotypic synonym: "Pseudobacterium rectale" (Hauduroy et al. 1937) Krasil'nikov 1949, effective name 2)
homotypic synonym: 'Roseburia rectale'
homotypic synonym: Roseburia rectale
homotypic genbank synonym: Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016
NCBI BLAST® name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; unclassified Lachnospiraceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 6,580 6,561
Protein 177,423 167,446
Structure 21 5
Genome 1 1
Popset 2 2
GEO Datasets 675 44
PubMed Central 826 826
Gene 9,915 1
SRA Experiments 31 29
Protein Clusters 2,013 2,013
Identical Protein Groups 57,902 54,007
Bio Project 13 9
Bio Sample 76 71
Bio Systems 703 221
Assembly 43 40
Probe 10 10
PubChem BioAssay 2 2
Taxonomy 4 1

Notes:

Comments and References:

type strains
Eubacterium rectale was described with type strains ATCC 33656 and VPI 0989. The genome was sequenced from ATCC 33656 (CP001107) but these strains were later lost in both collections. strain A1-86 = DSM 17629 = NCIMB 14373 was later designated as the neotype strain.

Reference to PubMed documentDuncan SH & Flint HJ (2008)
Duncan, S.H., and Flint, H.J. "Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an opinion." Int. J. Syst. Evol. Microbiol. (2008) 58:1735-1736.

Hauduroy P et al. (1937)
Hauduroy, P., Ehringer, G., Urbain, A., Guillot, G., and Magrou, J.: Dictionaire des bacteries pathogenes. Masson et Cie, Paris (1937). [No PubMed record available.]

Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

Nota BeneLudwig W et al. (2009)
Ludwig, W., Schleifer, K.-H., and Whitman, W.B. "Revised road map to the phylum Firmicutes." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 3 (The Firmicutes) (P. De Vos, G. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer, and W.B. Whitman, eds.), Springer-Verlag, New York. (2009) pp. 1-13.

Prevot AR (1938)
Prevot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]

Reference to PubMed documentRosero JA et al. (2016)
Rosero, J.A., Killer, J., Sechovcova, H., Mrazek, J., Benada, O., Fliegerova, K., Havlik, J., and Kopecny, J. "Reclassification of Eubacterium rectale (Hauduroy et al., 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows." Int. J. Syst. Evol. Microbiol. (2016) 66:768-773.

Reference to PubMed documentRosero JA et al. (2016b)
Rosero, J.A., Killer, J., Sechovcova, H., Mrazek, J., Benada, O., Fliegerova, K., Havlik, J., and Kopecny, J. "Reply to the Letter to the Editor by Paul O. Sheridan, Sylvia H. Duncan, Alan W. Walker, Karen P. Scott, Petra Louis and Harry J. Flint, referring to our paper 'Reclassification of Eubacterium rectale (Prevot et al. 1967) in a new genus Agathobacter gen. nov., as Agathobacter rectalis comb. nov., within the family Lachnospiraceae, and description of Agathobacter ruminis sp. nov., from the rumen', Int J Syst Evol Microbiol, DOI 10.1099/ijsem.0.000788." Int. J. Syst. Evol. Microbiol. (2016) 66:2107. [No abstract available.]

Reference to PubMed documentSheridan PO et al. (2016)
Sheridan, P.O., Duncan, S.H., Walker, A.W., Scott, K.P., Louis, P., and Flint, H.J. "Objections to the proposed reclassification of Eubacterium rectale as Agathobacter rectalis." Int. J. Syst. Evol. Microbiol. (2016) 66:2106. [No abstract available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Reference to PubMed documentZuo G & Hao B (2016)
Zuo, G., and Hao, B. "Whole-genome-based phylogeny supports the objections against the reclassification of Eubacterium rectale to Agathobacter rectalis." Int. J. Syst. Evol. Microbiol. (2016) 66:2451. [No abstract available.]


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND ALL
WUGSC - Washington University, Genome Sequencing Center
19,513 19,513
Totals per type
19,513 19,513

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
[Eubacterium] rectaleT1-815 organism-specific BioCyc
Eubacterium rectale (Hauduroy et al. 1937) PrA%A9vot 1938 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0137284 organism-specific Genomes On Line Database
Eubacterium rectale culture/stock collections Global Catalogue of Microorganisms
2698536600: Eubacterium rectale T1-815 organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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