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Taxonomy browser (Lactobacillus paracasei ATCC 334)

Lactobacillus paracasei ATCC 334

Taxonomy ID: 321967 (for references in articles please use NCBI:txid321967)
Scientific name: Lactobacillus paracasei ATCC 334
equivalent: Lactobacillus casei ATCC 334
equivalent: Lactobacillus casei str. ATCC 334
equivalent: Lactobacillus casei strain ATCC 334
NCBI BLAST® name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus casei group; Lactobacillus paracasei
   Entrez records   
Database name Direct links
Nucleotide 58
Protein 8,647
Structure 10
Genome 1
Popset 12
GEO Datasets 26
Gene 2,930
SRA Experiments 1
Identical Protein Groups 2,735
Bio Project 3
Bio Sample 2
Bio Systems 177
Assembly 1
Probe 2
PubChem BioAssay 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentJUDICIAL OPINION 82 (2008)
Judicial Commission. "The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name 'Lactobacillus zeae' contravenes Rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82." Int. J. Syst. Evol. Microbiol. (2008) 58:1764-1765.

Reference to PubMed documentMakarova K et al. (2006)
Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., Shakhova, V., Grigoriev, I., Lou, Y., Rohksar, D., Lucas, S., Huang, K., Goodstein, D.M., Hawkins, T., Plengvidhya, V., Welker, D., Hughes, J., Goh, Y., Benson, A., Baldwin, K., Lee, J.H., Diaz-Muniz, I., Dosti, B., Smeianov, V., Wechter, W., Barabote, R., Lorca, G., Altermann, E., Barrangou, R., Ganesan, B., Xie, Y., Rawsthorne, H., Tamir, D., Parker, C., Breidt, F., Broadbent, J., Hutkins, R., O'sullivan, D., Steele, J., Unlu, G., Saier, M., Klaenhammer, T., Richardson, P., Kozyavkin, S., Weimer, B., and Mills, D. "Comparative genomics of the lactic acid bacteria." Proc. Natl. Acad. Sci. USA (2006) 103:15611-15616.


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
45,210 45,210
Totals per type
45,210 45,210

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus paracaseiATCC 334 organism-specific BioCyc
GOLD: Go0000284 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
639633028: Lactobacillus casei ATCC 334 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
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Information from sequence entries

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