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Taxonomy browser (Staphylococcus epidermidis RP62A)

Staphylococcus epidermidis RP62A

Taxonomy ID: 176279 (for references in articles please use NCBI:txid176279)
Scientific name: Staphylococcus epidermidis RP62A
NCBI BLAST® name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Staphylococcus epidermidis ATCC 35984
 
equivalent: Staphylococcus epidermidis str. RP62A
 
equivalent: Staphylococcus epidermidis strain RP62A
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus epidermidis
   Entrez records   
Database name Direct links
Nucleotide 101
Protein 5,893
Structure 35
Genome 1
Popset 1
Conserved Domains 3
GEO Datasets 40
PubMed Central 16
Gene 2,669
SRA Experiments 1
GEO Profiles 46,030
Identical Protein Groups 2,885
Bio Project 4
Bio Sample 14
Bio Systems 196
Assembly 1
Probe 8
PubChem BioAssay 49
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentGill SR et al. (2005)
Gill, S.R., Fouts, D.E., Archer, G.L., Mongodin, E.F., Deboy, R.T., Ravel, J., Paulsen, I.T., Kolonay, J.F., Brinkac, L., Beanan, M., Dodson, R.J., Daugherty, S.C., Madupu, R., Angiuoli, S.V., Durkin, A.S., Haft, D.H., Vamathevan, J., Khour,i .H, Utterback, T., Lee, C., Dimitrov, G., Jiang, L., Qin, H., Weidman, J., Tran, K., Kang, K., Hance, I.R., Nelson, K.E., and Fraser, C.M. "Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain." J. Bacteriol. (2005) 187:2426-2438.


Genome Information

See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK SHOTGUN WGS ALL
TIGR - The Institute for Genome Research
910 60,696 59,796 121,402
Totals per type
910 60,696 59,796 121,402

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Staphylococcus epidermidis meta-databases BacDive
Staphylococcus epidermidisRP62A organism-specific BioCyc
GOLD: Go0000505 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
637000282: Staphylococcus epidermidis RP62A organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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