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Taxonomy browser (Lactobacillus casei)

Lactobacillus casei

Taxonomy ID: 1582 (for references in articles please use NCBI:txid1582)
Scientific name: Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 (Approved Lists 1980) emend. Dicks et al. 1996, nom. approb. 1)
type strain of Lactobacillus casei: ATCC:393
type strain of Lactobacillus casei: BCRC:10697
type strain of Lactobacillus casei: CECT:475
type strain of Lactobacillus casei: CIP:103137
type strain of Lactobacillus casei: DSM:20011
type strain of Lactobacillus casei: IAM:12473
type strain of Lactobacillus casei: IFO:15883
type strain of Lactobacillus casei: JCM:1134
type strain of Lactobacillus casei: KCTC:3109
type strain of Lactobacillus casei: BCCM/LMG:6904
type strain of Lactobacillus casei: NBRC:15883
type strain of Lactobacillus casei: NRRL:B:1922
type strain of Lactobacillus casei: personal::Hucker03
type strain of Lactobacillus casei: personal::Orla-Jensen 7
type strain of Lactobacillus casei: personal::OrlandL-323
type strain of Lactobacillus casei: personal::Tittsler303
type strain of Lactobacillus casei: NCIMB:11970
type strain of Lactobacillus casei: NCDO:161
homotypic synonym: "Streptobacterium casei" Orla-Jensen 1919, effective name 2)
homotypic synonym: "Lactobacillus casei" Bergey et al. 1923, effective name 2)
homotypic synonym: "Lactobacterium casei" (Orla-Jensen 1916) Krasil'nikov 1949, effective name 2)
homotypic synonym: Lactobacillus casei subsp. casei
includes: Lactobacillus sp. NCIM 2363
includes: Lactobacillus sp. NCIM 2732
includes: Lactobacillus sp. T2
includes: Lactobacillus sp. T20
NCBI BLAST® name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: "Bacillus a" von Freudenreich 1891
 
homotypic synonym: "Bacillus a" von Freudenreich 1890
heterotypic synonym: "Bacillus casei a" von Freudenreich and Thoni 1904
heterotypic synonym: "Bacterium casei a" Orla-Jensen 1916
heterotypic synonym: "Caseobacterium vulgare" Orla-Jensen 1916, effective name 2)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus casei group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 11,165 8,338
Protein 77,723 50,372
Structure 96 83
Genome 1 1
Popset 210 210
GEO Datasets 113 88
PubMed Central 3,843 3,843
Gene 19,194 138
SRA Experiments 154 128
Protein Clusters 2,559 2,559
Identical Protein Groups 33,009 23,530
Bio Project 52 36
Bio Sample 164 134
Bio Systems 1,300 -
Assembly 31 16
Probe 15 15
PubChem BioAssay 395 395
Taxonomy 25 1

Notes:

Comments and References:

Nota BeneBiavati B (2001)
Biavati, B. "International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of the Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 26 and 29 August 1996, Budapest, Hungary." Int. J. Syst. Evol. Microbiol. (2001) 51:257-258. [No PubMed record available.] (Note: the proposal of Dicks et al. 1996 is supported by the subcommittee.)

Reference to PubMed documentChen H et al. (2000)
Chen, H., Lim, C.K., Lee, Y.K., and Chan, Y.N. "Comparative analysis of the genes encoding 23S-5S rRNA intergenic spacer regions of Lactobacillus casei-related strains." Int. J. Syst. Evol. Microbiol. (2000) 50:471-478.

Nota BeneDellaglio F et al. (1991)
Dellaglio, F., Dicks, L.M.T., Du Toit, M., and Torriani, S. "Designation of ATCC 334 in place of ATCC 393 (NCDO 161) as the neotype strain of Lactobacillus casei subsp. casei and rejection of the name Lactobacillus paracasei (Collins et al., 1989). Request for an opinion." Int. J. Syst. Bacteriol. (1991) 41:340-342. [No PubMed record available.]

Reference to PubMed documentDellaglio F et al. (2002)
Dellaglio, F., Felis, G.E., and Torriani, S. "The status of the species Lactobacillus casei (Orla-Jensen 1916) Hansen and Lessel 1971 and Lactobacillus paracasei Collins et al. 1989. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2002) 52:285-287.

Reference to PubMed documentDicks LM et al. (1996)
Dicks, L.M.T., Du Plessis, E.M., Dellaglio, F., and Lauer, E. "Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp.casei, and rejection of the name Lactobacillus paracasei." Int. J. Syst. Bacteriol. (1996) 46:337-340. (Note: this proposal is rejected by the Judicial Commission in Opinion 82.)

Reference to PubMed documentFelis GE et al. (2001)
Felis, G.E., Dellaglio, F., Mizzi, L., and Torriani, S. "Comparative sequence analysis of a recA gene fragment brings new evidence for a change in the taxonomy of the Lactobacillus casei group." Int. J. Syst. Evol. Microbiol. (2001) 51:2113-2117.

Nota BeneHansen PA & Lessel EF (1971)
Hansen, P.A., and Lessel, E.F. "Lactobacillus casei (Orla-Jensen) comb. nov." Int. J. Syst. Bacteriol. (1971) 21:69-71. [No PubMed record available.]

Reference to PubMed documentJUDICIAL OPINION 82 (2008)
Judicial Commission. "The type strain of Lactobacillus casei is ATCC 393, ATCC 334 cannot serve as the type because it represents a different taxon, the name Lactobacillus paracasei and its subspecies names are not rejected and the revival of the name 'Lactobacillus zeae' contravenes Rules 51b (1) and (2) of the International Code of Nomenclature of Bacteria. Opinion 82." Int. J. Syst. Evol. Microbiol. (2008) 58:1764-1765.

Nota BeneKlein G (2001)
Klein, G. "International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 22 and 23 September 1999, Veldhoven, The Netherlands." Int. J. Syst. Evol. Microbiol. (2001) 51:259-261. [No PubMed record available.]

Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

Reference to PubMed documentMoir K et al. (1997)
Mori, K., Yamazaki, K., Ishiyama, T., Katsumata, M., Kobayashi, K., Kawai, Y., Inoue, N., and Shinano, H. "Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa." Int. J. Syst. Bacteriol. (1997) 47:54-57.

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Nota BeneWayne LG et al. (1994) (re Dellaglio et al.)
Wayne, L.G. "Actions of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinions published between January 1985 and July 1993." Int. J. Syst. Bacteriol. (1994) 44:177-178. (Note: the request of Dellaglio et al. (1991) is rejected.) [No PubMed record available.]


External Information Resources (NCBI LinkOut)

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Lactobacillus casei meta-databases BacDive
12 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus casei culture/stock collections Global Catalogue of Microorganisms
4 records from this provider organism-specific Integrated Microbial Genomes
Wikipedia taxonomy/phylogenetic iPhylo
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