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Taxonomy browser (Bacillus amyloliquefaciens)

Bacillus amyloliquefaciens

Taxonomy ID: 1390 (for references in articles please use NCBI:txid1390)
Scientific name: Bacillus amyloliquefaciens (ex Fukumoto 1943) Priest et al. 1987 emend. Wang et al. 2008
type strain of Bacillus amyloliquefaciens: ATCC:23350
type strain of Bacillus amyloliquefaciens: BCRC:11601
type strain of Bacillus amyloliquefaciens: CCUG:28519
type strain of Bacillus amyloliquefaciens: CFBP:4246
type strain of Bacillus amyloliquefaciens: CIP:103265
type strain of Bacillus amyloliquefaciens: DSM:7
type strain of Bacillus amyloliquefaciens: HAMBI:1824
type strain of Bacillus amyloliquefaciens: IFO:15535
type strain of Bacillus amyloliquefaciens: BCCM/LMG:12234
type strain of Bacillus amyloliquefaciens: BCCM/LMG:9814
type strain of Bacillus amyloliquefaciens: NBRC:15535
type strain of Bacillus amyloliquefaciens: NCAIM B.01704
type strain of Bacillus amyloliquefaciens: NCIMB:12077
type strain of Bacillus amyloliquefaciens: NRRL:B:14393
type strain of Bacillus amyloliquefaciens: personal::Fukumoto strain F
includes: Bacillus sp. M16(2010)
includes: Bacillus sp. M7(2010)
includes: Bacillus sp. BHR1P1B2
includes: Bacillus sp. BHR3P1B2
includes: Bacillus sp. BTSS3
includes: Bacillus sp. CCF7
includes: Bacillus sp. EnB-bsys5
includes: Bacillus sp. HU1
includes: Bacillus sp. PUE-MAN5
includes: Bacillus amyloliquefaciens subsp. amyloliquefaciens (Priest et al. 1987) Borriss et al. 2011
includes: Bacillus sp. 39(2011)
includes: Bacillus sp. 51(2011)
NCBI BLAST® name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: "Bacillus amyloliquifaciens" (sic) Fukumoto 1943, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 10,247 9,723
Protein 291,298 226,073
Structure 140 140
Genome 1 1
Popset 670 670
GEO Datasets 36 36
PubMed Central 1,562 1,562
Gene 33,675 8
SRA Experiments 71 67
Protein Clusters 1,890 1,890
Identical Protein Groups 96,067 82,564
Bio Project 99 78
Bio Sample 155 128
Bio Systems 1,958 -
Assembly 67 49
Probe 17 17
PubChem BioAssay 12 12
Taxonomy 27 1

Notes:

Comments and References:

Reference to PubMed documentBorriss R et al. (2011)
Borriss, R., Chen, X.-H., Rueckert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., Junge, H., Vater, J., Puhler, A., and Klenk, H.-P. "Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons." Int. J. Syst. Evol. Microbiol. (2011) 61:1786-1801.

Reference to PubMed documentDunlap CA et al. (2015)
Dunlap, C.A., Kim, S.J., Kwon, S.W., and Rooney, A.P. "Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus." Int. J. Syst. Evol. Microbiol. (2015) 65:2104-2109.

Reference to PubMed documentDunlap CA et al. (2016)
Dunlap, C.A., Kim, S.-J., Kwon, S.-W., and Rooney, A.P. "Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics." Int. J. Syst. Evol. Microbiol. (2016) 66:1212-1217.

Reference to PubMed documentFan B et al. (2017)
Fan, B., Blom, J., Klenk, H.-P., and Borriss, R. "Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis form an 'Operational Group B. amyloliquefaciens' within the B. subtilis species complex." Front. Microbiol. (2017) 8:22.

Fukumoto J (1943)
Fukumoto, J. "Studies on the production of bacterial amylase. I. Isolation of bacteria secreting potent amylases and their distribution." J. Agric. Chem. Soc. Jpn. (1943) 19:487-503. [No PubMed record available.]

Nota BeneHeyndrickx M et al. (1997)
Heyndrickx, M., Lebbe, L., Vancanneyt, M., Kersters, K., De Vos, P., Logan, N.A., Forsyth, G., Nazli, S., Ali, N., and Berkeley, R.C.W. "A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig., and A. migulanus, and A. thermoaerophilus." Int. J. Syst. Bacteriol. (1997) 47:808-817. [No PubMed record available.]

Nota BenePriest FG et al. (1987)
Priest, F.G., Goodfellow, M., Shute, L.A., and Berkeley, R.C.W. "Bacillus amyloliquefaciens sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1987) 37:69-71. [No PubMed record available.]

Reference to PubMed documentRuiz-Garcia C et al. (2005)
Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., Llamas, I,. and Quesada, E. "Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain." Int. J. Syst. Evol. Microbiol. (2005) 55:191-195. Published online 30 July 2004. doi:10.1099/ijs.0.63310-0. [N.B.: the type strain is listed as CECT 5686 in the abstract, but as CECT 5687 in the body of the text. CECT 5686 is apparently correct, according to the annotation at the CECT.]

Reference to PubMed documentWang LT et al. (2008)
Wang, L.-T., Lee, F.-L., Tai, C.-J., and Kuo, H.-P. "Bacillus velezensis is a later heterotypic synonym of Bacillus amyloliquefaciens." Int. J. Syst. Evol. Microbiol. (2008) 58:671-675.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacillus amyloliquefaciens meta-databases BacDive
5 records from this provider organism-specific BioCyc
Bacillus amyloliquefaciens (ex Fukumoto 1943) Priest et al., 1987 taxonomy/phylogenetic Encyclopedia of life
32 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacillus amyloliquefaciens culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
29 records from this provider organism-specific Integrated Microbial Genomes
Bacillus amyloliquefaciens taxonomy/phylogenetic Lifemap
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