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Taxonomy browser (Brachypodium distachyon)

Brachypodium distachyon

Taxonomy ID: 15368 (for references in articles please use NCBI:txid15368)
Scientific name: Brachypodium distachyon (L.) P.Beauv.
Genbank common name: stiff brome
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: annual false brome
common name: false brome
common name: purple false brome
Lineage( abbreviated )
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
   Entrez records   
Database name Direct links
Nucleotide 69,185
Nucleotide EST 206,255
Nucleotide GSS 266,612
Protein 96,477
Structure 3
Genome 1
Popset 130
GEO Datasets 243
UniGene 10,698
PubMed Central 2,456
Gene 36,551
SRA Experiments 3,259
Protein Clusters 16,065
Identical Protein Groups 54,893
Bio Project 1,870
Bio Sample 3,390
Bio Systems 266
Assembly 6
Clone DB 168,770
Probe 27,371
Taxonomy 1

Comments and References:

Nota BeneTROPICOS (Nov 12, 2012)
Name verified on 12 November 2012 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneAfrican Plant Database (Nov 10, 2012)
Name accessed on 10 November 2012 in: African Flowering Plants Database (version 3.1). Conservatoire et Jardin botaniques de la Villle de Geneve and South African National Biodiversity Institute, Pretoria, retrieved from http://www.ville-ge.ch/musinfo/bd/cjb/africa

Catalan P et al. 2012
Catalan P, Mueller J, Hasterok R, Jenkins G, Mur LAJ, Langdon T, Betekhtin T, Siwinska D, Pimentel M and Lopez-Alvarez D. 2012. Evolution and taxonomic split of the model grass Brachypodium distachyon. Annals of Botany (2012) 109(2): 385-405. doi: 10.1093/aob/mcr294 First published online: January 1, 2012

Nota BeneFlora of China - Poaceae
Chen S-L et al. 2006. Poaceae (R. Brown) Barnhart. In Wu, Z. Y., P. H. Raven & D. Y. Hong, eds. Flora of China. Vol. 22 (Poaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org


Genome Information

Go to NCBI genomic BLAST page for Brachypodium distachyon
Genome view: 6 chromosomes
Names 1 2 3 4 5 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND WGS ALL
HAGSC - Hudson Alpha Genome Sequencing Center
139,546 - 139,546
JGI - Joint Genome Institute, U.S. Department of Energy
- 4,439,712 4,439,712
Totals per type
139,546 4,439,712 4,579,258

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Brachypodium distachyon taxonomy taxonomy/phylogenetic Arctos Specimen Database
Brachypodium distachyon taxonomy/phylogenetic CalPhotos
Brachypodium distachyon (L.) Beauv. taxonomy/phylogenetic Encyclopedia of life
581 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2614208542: Brachypodium distachyon Bd21-3 organism-specific Integrated Microbial Genomes
Brachypodium distachyon (L.) Beauv. taxonomy/phylogenetic Integrated Taxonomic Information System
Brachypodium distachyon taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Brachypodium distachyon taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Brachypodium distachyon taxonomy/phylogenetic The International Plant Names Index
Brachypodium distachyon taxonomy/phylogenetic TreeBase
Brachypodium distachyon (L.) P. Beauv. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
5 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Brachypodium distachyon taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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