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Taxonomy browser (Ciona intestinalis)

Ciona intestinalis

Taxonomy ID: 7719 (for references in articles please use NCBI:txid7719)
Scientific name: Ciona intestinalis (Linnaeus, 1767)
homotypic synonym: Ascidia intestinalis
Genbank common name: vase tunicate
NCBI BLAST® name: tunicates
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 13 (Ascidian Mitochondrial)
Other names:
common name: sea vase
common name: yellow sea squirt
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,249,983 1,249,982
Protein 23,899 23,886
Structure 17 17
Genome 1 1
Popset 46 46
Conserved Domains 1 1
GEO Datasets 552 552
UniGene 29,522 29,522
PubMed Central 3,113 3,113
Gene 21,136 21,097
SRA Experiments 313 313
Protein Clusters 12 12
Identical Protein Groups 20,852 20,852
Bio Project 78 76
Bio Sample 418 418
Bio Systems 255 255
Assembly 4 4
Probe 211 211
Taxonomy 2 1

Genome Information

Go to NCBI genomic BLAST® page for Ciona intestinalis
Genome view: 14 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
EST WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
428,824 2,911,104 3,339,928
NIG - National Institute of Genetics (Japan)
- 2,903,961 2,903,961
Totals per type
428,824 5,815,065 6,243,889

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Ciona intestinalis taxonomy/phylogenetic Animal Diversity Web
Ciona intestinalis taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Ciona intestinalis taxonomy/phylogenetic Barcodes of Life
Ciona intestinalis (Linnaeus, 1767) taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0000662 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2507525001: Ciona intestinalis organism-specific Integrated Microbial Genomes
Ciona intestinalis (Linnaeus, 1767) taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Ciona intestinalis taxonomy/phylogenetic Ocean Biogeographic Information System
plazi taxonomy/phylogenetic Plazi
WebScipio: Ciona intestinalis organism-specific WebScipio - eukaryotic gene identification
Ciona intestinalis (Linnaeus, 1767) taxonomy/phylogenetic World Register of Marine Species
diArk: Ciona intestinalis organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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