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Taxonomy browser (Herbaspirillum seropedicae SmR1)

Herbaspirillum seropedicae SmR1

Taxonomy ID: 757424 (for references in articles please use NCBI:txid757424)
Scientific name: Herbaspirillum seropedicae SmR1
Inherited blast name: b-proteobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
equivalent name: Herbaspirillum seropedicae str. SmR1
equivalent name: Herbaspirillum seropedicae strain SmR1
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum; Herbaspirillum seropedicae
   Entrez records   
Database name Direct links
Nucleotide 15
Nucleotide GSS 54
Protein 9,476
Structure 1
Genome 1
PubMed Central 3
Gene 9,645
SRA Experiments 37
Identical Protein Groups 5,470
Bio Project 8
Bio Sample 38
Bio Systems 242
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentMonteiro RA et al. (2012)
Monteiro, R.A., Balsanelli, E., Tuleski, T., Faoro, H., Cruz, L.M., Wassem, R., de Baura, V.A., Tadra-Sfeir, M.Z., Weiss, V., DaRocha, W.D., Muller-Santos, M., Chubatsu, L.S., Huergo, L.F., Pedrosa, F.O., and de Souza, E.M. "Genomic comparison of the endophyte Herbaspirillum seropedicae SmR1 and the phytopathogen Herbaspirillum rubrisubalbicans M1 by suppressive subtractive hybridization and partial genome sequencing." FEMS Microbiol. Ecol. (2012) 80:441-451.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Herbaspirillum seropedicae meta-databases BacDive
Herbaspirillum seropedicaeSmR1 organism-specific BioCyc
GOLD: Go0007583 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
648028033: Herbaspirillum seropedicae SmR1 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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