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Taxonomy browser (Herbaspirillum seropedicae SmR1)

Herbaspirillum seropedicae SmR1

Taxonomy ID: 757424 (for references in articles please use NCBI:txid757424)
current name
Herbaspirillum seropedicae SmR1
Herbaspirillum seropedicae str. SmR1
Herbaspirillum seropedicae strain SmR1
NCBI BLAST name: b-proteobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum; Herbaspirillum seropedicae
   Entrez records   
Database name Direct links
Nucleotide 69
Protein 9,528
Structure 1
Genome 1
PubMed Central 3
Gene 9,645
SRA Experiments 53
Identical Protein Groups 5,680
Bio Project 10
Bio Sample 76
Bio Systems 242
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Monteiro RA et al. (2012)
Monteiro, R.A., Balsanelli, E., Tuleski, T., Faoro, H., Cruz, L.M., Wassem, R., de Baura, V.A., Tadra-Sfeir, M.Z., Weiss, V., DaRocha, W.D., Muller-Santos, M., Chubatsu, L.S., Huergo, L.F., Pedrosa, F.O., and de Souza, E.M. "Genomic comparison of the endophyte Herbaspirillum seropedicae SmR1 and the phytopathogen Herbaspirillum rubrisubalbicans M1 by suppressive subtractive hybridization and partial genome sequencing." FEMS Microbiol. Ecol. (2012) 80:441-451.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Herbaspirillum seropedicae SmR1 organism-specific BioCyc
GOLD: Go0007583 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
648028033: Herbaspirillum seropedicae SmR1 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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