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Taxonomy browser (Colletotrichum siamense)

Colletotrichum siamense

Taxonomy ID: 690259 (for references in articles please use NCBI:txid690259)
current name
Colletotrichum siamense Prihastuti, L. Cai & K.D. Hyde, 2009
holotype of Colletotrichum siamense: MFLU:090230
culture from type material of Colletotrichum siamense: BPDI:I2, ICMP:18578
includes:
Colletotrichum sp. HHP-2009a
Colletotrichum sp. VPD-2013d
Colletotrichum sp. YLY-2009e
NCBI BLAST name: ascomycetes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
heterotypic synonym
Colletotrichum hymenocallidis Y.L. Yang, Zuo Y. Liu, K.D. Hyde & L. Cai 2009
culture from holotype of Colletotrichum hymenocallidis: CBS:125378
type material of Colletotrichum hymenocallidis: CSSN:2
includes:
Colletotrichum sp. YLY-2009d
heterotypic synonym
Colletotrichum jasmini-sambac Wikee, K.D. Hyde, L. Cai and McKenzie, 2011 in [Wikee et al. (2019)]
holotype of Colletotrichum jasmini-sambac: MFLU:10-0214
culture from holotype of Colletotrichum jasmini-sambac: MFLUCC:10-0277
type material of Colletotrichum jasmini-sambac: LLTA:01, LC:921
includes:
Colletotrichum sp. FL-2012c
Colletotrichum sp. LC921
heterotypic synonym
Colletotrichum dianesei Nelson B. Lima, 2013 in [Lima et al. (2013)]
holotype of Colletotrichum dianesei: CMM:4083
isotype of Colletotrichum dianesei: MFLU:1300058
includes:
Colletotrichum sp. NBL-2013
Colletotrichum sp. WASV-2014
heterotypic synonym
Colletotrichum melanocaulon V. Doyle, P.V. Oudem. & S.A. Rehner, 2013, nom. inval. 1) in [Doyle et al. (2013)]
includes:
Colletotrichum sp. VPD-2013c
heterotypic synonym
Colletotrichum communis G. Sharma, Pinnaka & Shenoy, 2014 in [Sharma et al. (2015)]
type material of Colletotrichum communis: NK:24
culture from type material of Colletotrichum communis: MTCC:11599
includes:
Colletotrichum sp. GM018
Colletotrichum sp. GM043A
Colletotrichum sp. GM043B
Colletotrichum sp. GM10
Colletotrichum sp. GM147
Colletotrichum sp. GM150
Colletotrichum sp. GM192
Colletotrichum sp. GM301
Colletotrichum sp. GM314
Colletotrichum sp. GM397
Colletotrichum sp. ITCC 6158
Colletotrichum sp. NK22
Colletotrichum sp. NK23
Colletotrichum sp. NK24
Colletotrichum sp. NK25
Colletotrichum sp. NK28
Colletotrichum sp. NK29
heterotypic synonym
Colletotrichum endomangiferae W.A.S. Vieira, M.P.S. Camara & S.J. Michereff, 2014 in [Vieira et al. (2014)]
holotype of Colletotrichum endomangiferae: CMM:3814
includes:
Colletotrichum sp. CMM3740
Colletotrichum sp. CMM3814
Colletotrichum sp. WASV-2014b
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Glomerellales; Glomerellaceae; Colletotrichum; Colletotrichum gloeosporioides species complex
   Entrez records   
Database name Direct links Links from type
Nucleotide 27,911 18
Protein 99,243 -
Genome 1 -
Popset 680 -
PubMed Central 69 -
Gene 15,191 -
SRA Experiments 110 -
Identical Protein Groups 50,972 -
Bio Project 5 -
Bio Sample 38 -
Assembly 20 1
Taxonomy 1 -

Notes:

Comments and References:

Wikee et al. (2019)
Wikee S. et al. 2011. Colletotrichum species from Jasmine (Jasminum sambac). Fungal Diversity 46:171-182.
Lima et al. (2013)
Lima N.B. et al. 2013. Five Colletotrichum species are responsible for mango anthracnose in northeastern Brazil. Fungal Diversity 61:75-88.
Doyle et al. (2013), doi: 10.1371/journal.pone.0062394, PubMed: abstract
Doyle VP et al. 2013. Habitat and host indicate lineage identity in Colletotrichum gloeosporioides s.l. from wild and agricultural landscapes in North America. PLoS One 8:e62394.
Sharma et al. (2015)
Sharma G. et al. 2015. Resolving the Colletotrichum siamense species complex using ApMat marker. Fungal Diversity 71: 247-267.
Vieira et al. (2014)
Vieira W.A.S. et al. (2019) Endophytic species of Colletotrichum associated with mango in northeastern Brazil. Fungal Diversity.
Cao et al. (2019), doi:10.1094/PDIS-02-18-0374-RE
Cao X. et al. 2019. Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China. Plant Disease 103.
Liu et al. (2016), doi:10.1186/s12862-016-0649-5
Liu F. et al. 2016. Species boundaries in plant pathogenic fungi: a Colletotrichum case study. BMC Evol Biol.
Weir BS et al. (2012), other link:https://www.ncbi.nlm.nih.gov/pmc/PMC3458417
Weir BS, Johnston PR, Damm U. 2012. The Colletotrichum gloeosporioides species complex. Stud Mycol 73(1):115-80.
Yang et al. (2009)
Yang YL, Liu ZY, Cai L, Hyde KD, Yu ZN, McKenzie EHC, 2009. Colletotrichum anthracnose of Amaryllidaceae. Fungal Diversity.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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