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Taxonomy browser (Escherichia coli)

Escherichia coli

Taxonomy ID: 562 (for references in articles please use NCBI:txid562)
Scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
type strain of Escherichia coli: ATCC 11775
type strain of Escherichia coli: CCUG 24
type strain of Escherichia coli: CCUG 29300
type strain of Escherichia coli: CIP 54.8
type strain of Escherichia coli: DSM 30083
type strain of Escherichia coli: JCM 1649
type strain of Escherichia coli: LMG 2092
type strain of Escherichia coli: NBRC 102203
type strain of Escherichia coli: NCCB 54008
type strain of Escherichia coli: NCTC 9001
Inherited blast name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896 1)
synonym: "Bacillus coli" Migula 1895 1)
synonym: "Bacterium coli commune" Escherich 1885 1)
synonym: Enterococcus coli
common name: E. coli
includes: Escherichia sp. 3_2_53FAA
includes: Escherichia sp. MAR
includes: bacterium 10a
includes: bacterium E3
equivalent name: Escherichia/Shigella coli
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
   Entrez records   
Database name Subtree links Direct links
Nucleotide 5,158,564 4,057,835
Nucleotide GSS 729 290
Protein 37,115,960 26,139,364
Structure 8,549 5,118
Genome 1 1
Popset 5,069 5,060
Conserved Domains 45 28
GEO Datasets 12,933 7,659
PubMed Central 278,884 278,880
Gene 334,825 18,004
SRA Experiments 92,139 77,508
GEO Profiles 313,301 298,677
Protein Clusters 17,571 17,571
Bio Project 6,308 3,045
Bio Sample 98,236 84,250
Bio Systems 22,561 1,814
Assembly 14,031 10,525
Probe 2,210 1,804
PubChem BioAssay 16,624 14,942
Taxonomy 3,286 1

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]

Escherich T (1885)
Escherich, T. "Die Darmbakterien des Neugeborenen und Sauglingen" Fortschr. Med. (1885) 3:515-528,547-554.

Nota BeneLapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]

Reference to PubMed documentMartinez-Murcia AJ et al. (1999)
Martinez-Murcia, A.J., Anton, A.I., Rodriguez-Valera, F. "Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli." Int. J. Syst. Bacteriol. (1999) 49:601-610.

Migula W (1895)
Migula, W. "Bacteriaceae (Stabchenbacterien)." In: Engler and Prantl (Editors), Die Naturlichen Pflanzenfamilien. (1895) W. Engelmann, Leipzig, Teil I Abt. 1a, pp.20-30. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PCR ALL
BI - Broad Insititute
1,710 1,710
LGC - LGC Group llc
96 96
NIST - National Institute for Standards and Technology
144 144
Totals per type
1,950 1,950

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Escherichia coli meta-databases BacDive
100 records from this provider organism-specific BioCyc
2 records from this provider supplemental materials Dryad Digital Repository
Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
820 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Escherichia coli culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
1328 records from this provider organism-specific Integrated Microbial Genomes
Escherichia coli taxonomy/phylogenetic Integrated Taxonomic Information System
Escherichia coli taxonomy/phylogenetic Lifemap
4 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
Escherichia coli (taxon passport) culture/stock collections StrainInfo
3 records from this provider companies/research institutes The Institute for Genomic Research
Escherichia coli taxonomy/phylogenetic TreeBase
Escherichia coli Castellani & Chalmers, 1919 taxonomy/phylogenetic World Register of Marine Species
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Information from sequence entries

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