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Taxonomy browser (Setaria italica)

Setaria italica

Taxonomy ID: 4555 (for references in articles please use NCBI:txid4555)
current name
Setaria italica (L.) P.Beauv., 1812
Panicum italicum L., 1753
homotypic synonym:
Chaetochloa italica (L.) Scribn., 1897
Setaria viridis subsp. italica (L.) Briq., 1910
Genbank common name: foxtail millet
NCBI BLAST name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Pennisetum macrochaetum J.Jacq., 1820
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
   Entrez records   
Database name Direct links
Nucleotide 209,641
Protein 80,234
Structure 4
Genome 1
Popset 101
GEO Datasets 50
PubMed Central 2,477
Gene 39,808
SRA Experiments 8,427
Identical Protein Groups 49,571
BioProject 350
BioSample 10,719
Assembly 3
PubChem BioAssay 6
Taxonomy 1

Comments and References:

image:Setaria italica
Aliscioni SS et al. 2003, doi:10.3732/ajb.90.5.796
Aliscioni SS, Giussani LM, Zuloaga FO, and Kellogg EA. 2003. A molecular phylogeny of Panicum (Poaceae: Paniceae): tests of monophyly and phylogenetic placement within the Panicoideae. American Journal of Botany 90: 796-821.

Genome Information

Go to NCBI genomic BLAST page for Setaria italica
Genome view: 10 chromosomes

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Setaria italica taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
14 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2614208509: Setaria italica Yugu1 (version 2) organism-specific Integrated Microbial Genomes
Setaria italica (L.) Beauv. taxonomy/phylogenetic Integrated Taxonomic Information System
Setaria italica taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Setaria italica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Setaria italica ((L.) P.Beauv.) herbarium/museum collections PlantaeDB, University of Bucharest
Setaria italica taxonomy/phylogenetic Plants of the World Online
Setaria italica taxonomy/phylogenetic The International Plant Names Index
Setaria italica (L.) P. Beauv. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
6 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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