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Taxonomy browser (Oryza glaberrima)

Oryza glaberrima

Taxonomy ID: 4538 (for references in articles please use NCBI:txid4538)
Scientific name: Oryza glaberrima Steud.
Genbank common name: African rice
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
   Entrez records   
Database name Direct links
Nucleotide 1,250
Nucleotide GSS 508,294
Protein 1,660
Genome 1
Popset 172
GEO Datasets 11
PubMed Central 211
Gene 127
SRA Experiments 237
Identical Protein Groups 725
Bio Project 20
Bio Sample 312
Assembly 2
Clone DB 36,031
Probe 1
Taxonomy 1

Comments and References:

Reference to PubMed documentSweeney M & McCouch S 2007
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759204/?tool=pubmed
Sweeney M and McCouch S. 2007. The complex history of the domestication of rice. Annals of Botany 100(5): 951-957.

Nota BeneFlora of China - Poaceae
Chen S-L et al. 2006. Poaceae (R. Brown) Barnhart. In Wu, Z. Y., P. H. Raven & D. Y. Hong, eds. Flora of China. Vol. 22 (Poaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org

Nota BeneTROPICOS (Aug 27, 2015)
Name accessed on 27 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneGRIN (Oct 18, 2016)
Name accessed on 18 October 2016 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.


Genome Information

Go to NCBI genomic BLAST page for Oryza glaberrima
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND SHOTGUN ALL
AGI - Arizona Genomics Institute
66,821 285,630 352,451
TIGR - The Institute for Genome Research
175 - 175
Totals per type
66,996 285,630 352,626

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
3 records from this provider supplemental materials Dryad Digital Repository
Oryza glaberrima Steudel taxonomy/phylogenetic Encyclopedia of life
4 records from this provider organism-specific Genomes On Line Database
Oryza glaberrima Steudel taxonomy/phylogenetic Integrated Taxonomic Information System
Oryza glaberrima taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza glaberrima taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Oryza glaberrima taxonomy/phylogenetic The International Plant Names Index
Oryza glaberrima Steud. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Oryza glaberrima organism-specific WebScipio - eukaryotic gene identification
2 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Oryza glaberrima taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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