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Taxonomy browser (Oryza punctata)

Oryza punctata

Taxonomy ID: 4537 (for references in articles please use NCBI:txid4537)
Scientific name: Oryza punctata Kotschy ex Steud.
NCBI BLAST® name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
   Entrez records   
Database name Direct links
Nucleotide 73,802
Protein 965
Genome 1
Popset 244
GEO Datasets 1
PubMed Central 49
Gene 149
SRA Experiments 31
Identical Protein Groups 566
Bio Project 3
Bio Sample 16
Assembly 2
Clone DB 36,103
Probe 142
Taxonomy 1

Comments and References:

Nota BeneTROPICOS (Aug 27, 2015)
Name accessed on 27 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneGRIN (Oct 18, 2016)
Name accessed on 18 October 2016 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.


Genome Information

Go to NCBI genomic BLAST® page for Oryza punctata
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND SHOTGUN ALL
AGI - Arizona Genomics Institute
- 251,982 251,982
PURDUE - Purdue University, Genomics Facility
68,384 - 68,384
TIGR - The Institute for Genome Research
169 - 169
Totals per type
68,553 251,982 320,535

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Oryza punctata Kotzchy ex Steud. taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0093725 organism-specific Genomes On Line Database
Oryza punctata Kotzchy ex Steud. taxonomy/phylogenetic Integrated Taxonomic Information System
Oryza punctata taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza punctata taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Oryza punctata taxonomy/phylogenetic The International Plant Names Index
Oryza punctata Kotschy ex Steud. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Oryza punctata organism-specific WebScipio - eukaryotic gene identification
diArk: Oryza punctata organism-specific diArk - a resource for eukaryotic genome research
Oryza punctata taxonomy/phylogenetic electronic Plant Information Centre
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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